{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1050575520346533504.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"HDL","@value":"https://hdl.handle.net/20.500.14094/90005798"}},{"identifier":{"@type":"DOI","@value":"10.1086/697542"}},{"identifier":{"@type":"URI","@value":"https://www.journals.uchicago.edu/doi/pdf/10.1086/697542"}},{"identifier":{"@type":"NAID","@value":"120006604618"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@language":"en","@value":"Environmental DNA reveals nonmigratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow waters"},{"@value":"Environmental DNA reveals nonmigratory individuals of <i>Palaemon paucidens</i> overwintering in Lake Biwa shallow waters"},{"@value":"Environmental DNA reveals nonmigratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow water"}],"dc:language":"en","description":[{"type":"Abstract","notation":[{"@language":"en","@value":"In Lake Biwa, the largest freshwater lake in Japan, the lacustrine shrimp Palaemon paucidens has been reported to undertake seasonal migrations, living in deep waters from autumn to winter and in shallow waters from spring to summer. Some investigators have suggested that some individuals overwinter in shallow waters, but the ecology and life history of such nonmigratory populations are poorly understood. We developed a species-specific environmental DNA (eDNA) marker to detect P. paucidens in water samples and used it to examine the distribution and relative abundance of overwintering individuals in the shallow waters of Lake Biwa. Water samples were collected from 21 shore sites and 32 surrounding freshwater lagoons of Lake Biwa in November 2015 and February 2016. In November, 4 shore and 12 freshwater lagoon sites were positive for P. paucidens eDNA, and in February, 4 shore and 9 freshwater lagoon sites were positive. The relative abundance of eDNA copies was estimated by quantitative real-time polymerase chain reaction (PCR). Simultaneous sampling of P. paucidens and its eDNA, conducted at the inlet and outlet of 5 freshwater lagoons in December 2016, validated our method as a quantitative measure of the relative abundance of P. paucidens local populations. The eDNA approach used here confirmed that some P. paucidens individuals overwinter in the shallow waters, suggesting life-history diversity in Lake Biwa populations."}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1070575520346533509","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000402292988"}],"foaf:name":[{"@language":"en","@value":"Wu, 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Toshifumi"},{"@language":"ja","@value":"源, 利文"},{"@language":"ja-Kana","@value":"ミナモト, トシフミ"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"21619549"},{"@type":"EISSN","@value":"21619565"}],"prism:publicationName":[{"@language":"en","@value":"Freshwater Science"}],"dc:publisher":[{"@value":"University of Chicago Press"}],"prism:publicationDate":"2018-06","prism:volume":"37","prism:number":"2","prism:startingPage":"307","prism:endingPage":"314"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","dc:rights":["© 2018 by The Society for Freshwater Science.","This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0), which permits non-commercial reuse of the work with attribution. For commercial use, contact journalpermissions@press.uchicago.edu."],"url":[{"@id":"https://www.journals.uchicago.edu/doi/pdf/10.1086/697542"},{"@id":"http://www.lib.kobe-u.ac.jp/handle_kernel/90005798"}],"availableAt":"2019-04-08","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=environmental%20DNA","dc:title":"environmental DNA"},{"@id":"https://cir.nii.ac.jp/all?q=eDNA","dc:title":"eDNA"},{"@id":"https://cir.nii.ac.jp/all?q=Palaemon%20paucidens","dc:title":"Palaemon paucidens"},{"@id":"https://cir.nii.ac.jp/all?q=migration","dc:title":"migration"},{"@id":"https://cir.nii.ac.jp/all?q=Lake%20Biwa","dc:title":"Lake Biwa"}],"dcterms:subject":[{"subjectScheme":"Other","notation":[{"@language":"en","@value":"environmental DNA"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"eDNA"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"Palaemon paucidens"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"migration"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"Lake Biwa"}]}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040282256933774976","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"17H03735"},{"@type":"JGN","@value":"JP17H03735"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17H03735/"}],"notation":[{"@language":"ja","@value":"環境DNA/RNAを利用した生物調査の新展開：水を汲んで生物の行動や状態を知る"},{"@language":"en","@value":"Development of novel biological survey method using environmental DNA/RNA: estimating the behavior and states of underwater organisms"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1050025031477836288","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Environmental DNA as a ‘Snapshot’ of Fish  Distribution: A Case Study of Japanese Jack Mackerel in 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shrimp<i>Palaemon paucidens</i>in an ancient lake in Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1050303564712817792","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Estimation of Fish Biomass Using Environmental DNA"}]},{"@id":"https://cir.nii.ac.jp/crid/1050575520347489408","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant"}]},{"@id":"https://cir.nii.ac.jp/crid/1050575520348927104","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Spatiotemporal changes in environmental DNA concentrations caused by fish spawning 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