{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360004234621458176.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1093/jb/mvt022"}},{"identifier":{"@type":"URI","@value":"http://academic.oup.com/jb/article-pdf/153/5/403/13311464/mvt022.pdf"}},{"identifier":{"@type":"PMID","@value":"23509007"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"GTPases involved in bacterial ribosome maturation"}],"description":[{"notation":[{"@value":"The ribosome is an RNA- and protein-based macromolecule having multiple functional domains to facilitate protein synthesis, and it is synthesized through multiple steps including transcription, stepwise cleavages of the primary transcript, modifications of ribosomal proteins and RNAs and assemblies of ribosomal proteins with rRNAs. This process requires dozens of trans-acting factors including GTP- and ATP-binding proteins to overcome several energy-consuming steps. Despite accumulation of genetic, biochemical and structural data, the entire process of bacterial ribosome synthesis remains elusive. Here, we review GTPases involved in bacterial ribosome maturation."}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380004234621458055","@type":"Researcher","foaf:name":[{"@value":"Simon Goto"}]},{"@id":"https://cir.nii.ac.jp/crid/1030003658316053121","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"80034635"},{"@type":"NRID","@value":"1000080034635"},{"@type":"NRID","@value":"9000005300186"},{"@type":"NRID","@value":"9000021280799"},{"@type":"NRID","@value":"9000007168429"},{"@type":"NRID","@value":"9000254150042"},{"@type":"NRID","@value":"9000005432909"},{"@type":"NRID","@value":"9000020410052"},{"@type":"NRID","@value":"9000296661228"},{"@type":"NRID","@value":"9000021282574"},{"@type":"NRID","@value":"9000253393830"},{"@type":"NRID","@value":"9000005938959"},{"@type":"NRID","@value":"9000253393834"},{"@type":"NRID","@value":"9000002571745"},{"@type":"NRID","@value":"9000253393105"},{"@type":"NRID","@value":"9000005008267"},{"@type":"NRID","@value":"9000364792687"},{"@type":"NRID","@value":"9000009224518"},{"@type":"NRID","@value":"9000020691186"},{"@type":"NRID","@value":"9000004446264"}],"foaf:name":[{"@value":"Akira Muto"}]},{"@id":"https://cir.nii.ac.jp/crid/1420282801190209152","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"80208785"},{"@type":"NRID","@value":"1000080208785"},{"@type":"NRID","@value":"9000414832163"},{"@type":"NRID","@value":"9000004416697"},{"@type":"NRID","@value":"9000329003880"},{"@type":"NRID","@value":"9000020770951"},{"@type":"NRID","@value":"9000253167799"},{"@type":"NRID","@value":"9000391625398"},{"@type":"NRID","@value":"9000253205833"},{"@type":"NRID","@value":"9000241513710"},{"@type":"NRID","@value":"9000014276977"},{"@type":"NRID","@value":"9000363244236"},{"@type":"NRID","@value":"9000000309546"},{"@type":"NRID","@value":"9000001153852"},{"@type":"NRID","@value":"9000391605610"},{"@type":"NRID","@value":"9000001738507"},{"@type":"NRID","@value":"9000391397035"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/read0180224"}],"foaf:name":[{"@value":"Hyouta Himeno"}]}],"publication":{"publicationIdentifier":[{"@type":"EISSN","@value":"17562651"},{"@type":"PISSN","@value":"0021924X"}],"prism:publicationName":[{"@value":"The Journal of Biochemistry"}],"dc:publisher":[{"@value":"Oxford University Press (OUP)"}],"prism:publicationDate":"2013-03-17","prism:volume":"153","prism:number":"5","prism:startingPage":"403","prism:endingPage":"414"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","url":[{"@id":"http://academic.oup.com/jb/article-pdf/153/5/403/13311464/mvt022.pdf"}],"createdAt":"2013-03-19","modifiedAt":"2022-02-11","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Bacteria","dc:title":"Bacteria"},{"@id":"https://cir.nii.ac.jp/all?q=Ribosomes","dc:title":"Ribosomes"},{"@id":"https://cir.nii.ac.jp/all?q=GTP%20Phosphohydrolases","dc:title":"GTP Phosphohydrolases"}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040282257128282880","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"23380045"},{"@type":"JGN","@value":"JP23380045"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23380045/"}],"notation":[{"@language":"ja","@value":"トランス翻訳の分子機構と生理機能"},{"@language":"en","@value":"Molecular mechanism and physiological roles of trans-translation"}]},{"@id":"https://cir.nii.ac.jp/crid/1040282257128293632","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"23380054"},{"@type":"JGN","@value":"JP23380054"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23380054/"}],"notation":[{"@language":"ja","@value":"ＲｓｇＡ／ＲｂｆＡが関わるリボソームの新しい機能"},{"@language":"en","@value":"Novel function of ribosome involved in RsgA/RbfA"}]},{"@id":"https://cir.nii.ac.jp/crid/1040282257198388608","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"24657114"},{"@type":"JGN","@value":"JP24657114"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24657114/"}],"notation":[{"@language":"ja","@value":"新しいｔＲＮＡ様低分子ＲＮＡの機能解析"},{"@language":"en","@value":"Function of a novel tRNA-like small RNA"}]},{"@id":"https://cir.nii.ac.jp/crid/1040282257198553088","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"24658066"},{"@type":"JGN","@value":"JP24658066"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24658066/"}],"notation":[{"@language":"ja","@value":"翻訳阻害剤による浸透圧耐性獲得機構の研究"},{"@language":"en","@value":"Mechanism of resistance to osmotic stress by translation inhibitors"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360004233402053504","@type":"Article","resourceType":"学術雑誌論文(journal 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Formation"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011145779457920","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Characterization of the <i>Bacillus subtilis</i> GTPase YloQ and its role in ribosome function"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011145921591040","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the\n            <i>Escherichia coli</i>\n            GTPase YjeQ in Late Ribosome Biogenesis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011146174732032","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Biochemical Characterization of Ribosome Assembly GTPase RbgA in Bacillus subtilis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011146315902208","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Mutational analysis of the ribosome assembly GTPase RbgA provides insight into ribosome interaction and ribosome-stimulated GTPase activation"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011146497161344","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"cpRAS: a novel circularly permuted RAS-like GTPase domain with a highly scattered phylogenetic distribution"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620345845888","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Era GTPase of Escherichia coli: binding to 16S rRNA and modulation of GTPase activity by RNA and carbohydrates"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620437174272","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Analysis of the Open and Closed Conformations of the GTP-binding Protein YsxC from Bacillus subtilis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620463720192","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A Posttermination Ribosomal Complex Is the Guanine Nucleotide Exchange Factor for Peptide Release Factor RF3"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574093821790976","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574093916066304","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Structure of an essential GTPase, YsxC, from<i>Thermotoga maritima</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574094091647104","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA."}]},{"@id":"https://cir.nii.ac.jp/crid/1360574095038087168","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A new essential gene of the `minimal genome' affecting cell division"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574095505493376","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Suppression of defective ribosome assembly in a <i>rbfA</i> deletion mutant by overexpression of Era, an essential GTPase in <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574095517088768","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Domain Arrangement of Der, a Switch Protein Containing Two GTPase Domains"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574095730422016","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Biochemical and physiological characterization of the GTP-binding protein Obg of Mycobacterium tuberculosis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574095963694976","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"16S rRNA Is Bound to Era of\n            <i>Streptococcus pneumoniae</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574096449383040","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Classification and evolution of P-loop GTPases and related ATPases"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574096571514368","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Ribosome-Small-Subunit-Dependent GTPase Interacts with tRNA-Binding Sites on the Ribosome"}]},{"@id":"https://cir.nii.ac.jp/crid/1360846642535580544","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855568668273536","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Structural Aspects of RbfA Action during Small Ribosomal Subunit Assembly"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855569124195712","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Involvement of the cgtA gene function in stimulation of DNA repair in Escherichia coli and Vibrio harveyi"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855569985979648","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855570122835456","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genome-Wide Screening of Genes Required for Swarming Motility in<i>Escherichia coli</i>K-12"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855570713856128","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Obg, an Essential GTP Binding Protein of\n            <i>Bacillus subtilis</i>\n            , Is Necessary for Stress Activation of Transcription Factor ς\n            <sup>B</sup>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137043432763520","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Pleiotropic changes resulting from depletion of Era, an essential GTP‐binding protein in <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137043438154112","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Era, an Essential Escherichia coli Small G-Protein, Binds to the 30S Ribosomal Subunit"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044072357504","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Essential GTPase YqeH Is Required for Proper Ribosome Assembly in\n            <i>Bacillus subtilis</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044292767360","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Potassium-activated GTPase Reaction in the G Protein-coupled Ferrous Iron Transporter B"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044410640384","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Ribosome assembly in eukaryotes"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044839315840","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The\n                    <i>Escherichia coli</i>\n                    GTPase CgtA\n                    <sub>E</sub>\n                    Cofractionates with the 50S Ribosomal Subunit and Interacts with SpoT, a ppGpp Synthetase/Hydrolase"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044947300224","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The\n            <i>Caulobacter crescentus</i>\n            CgtA\n            <sub>C</sub>\n            Protein Cosediments with the Free 50S Ribosomal Subunit"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044972078592","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The GTP-binding Protein YlqF Participates in the Late Step of 50 S Ribosomal Subunit Assembly in Bacillus subtilis"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137045380906880","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The GTP binding protein Obg homolog ObgE is involved in ribosome maturation"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137045623604224","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Guanine nucleotides stabilize the binding of Bacillus subtilis Obg to ribosomes"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137045998130816","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Analysis of GTPases carrying hydrophobic amino acid substitutions in lieu of the catalytic glutamine: Implications for GTP hydrolysis"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137046480377728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"YsxC, a Putative GTP-Binding Protein Essential for Growth of\n            <i>Bacillus subtilis</i>\n            168"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518464447872","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Possible role for the essential GTP-binding protein Obg in regulating the initiation of sporulation in Bacillus subtilis"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518775043456","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3′ end of 16S rRNA"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519475756544","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Total Reconstitution of Functionally Active 50S Ribosomal Subunits from\n            <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519880484352","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Suppressors of temperature-sensitive mutations in a ribosomal protein gene, rpsL (S12), of Escherichia coli K12"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418520682945792","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Cooperative and Critical Roles for Both G Domains in the GTPase Activity and Cellular Function of Ribosome-Associated\n            <i>Escherichia coli</i>\n            EngA"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418520859055872","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Gene for 16S rRNA Methyltransferase (\n            <i>ksgA</i>\n            ) Functions as a Multicopy Suppressor for a Cold-Sensitive Mutant of Era, an Essential RAS-Like GTP-Binding Protein in\n            <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418521195475200","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Structural and Biochemical Analysis of the Obg GTP Binding Protein"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418521282935552","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Functional analysis of the GTPases EngA and YhbZ encoded by<i>Salmonella typhimurium</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699993348918016","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"YsxC, an essential protein in Staphylococcus aureus crucial for ribosome assembly/stability"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994192294912","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The tandem GTPase, Der, is essential for the biogenesis of 50S ribosomal subunits in <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994372969088","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Crystal structure of ERA: A GTPase-dependent cell cycle regulator containing an RNA binding motif"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994509997056","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A GTP-binding protein (Era) has an essential role in growth rate and cell cycle control in Escherichia coli"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994752087296","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Era and RbfA Have Overlapping Function in Ribosome Biogenesis in <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699995435012608","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Dissection of 16S rRNA Methyltransferase (KsgA) Function in\n            <i>Escherichia coli</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699995603796864","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Role of GTPases in ribosome assembly"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981468340398336","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Interaction of Era with the 30S Ribosomal Subunit"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981468716494720","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Functional Characterization of EngAMS, a P-Loop GTPase of Mycobacterium smegmatis"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981470075106048","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Deciphering the Catalytic Machinery in 30S Ribosome Assembly GTPase YqeH"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981470174286848","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Exploring potassium‐dependent GTP 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