{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360004235502948736.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1111/dgd.12427"}},{"identifier":{"@type":"URI","@value":"https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fdgd.12427"}},{"identifier":{"@type":"URI","@value":"https://onlinelibrary.wiley.com/doi/pdf/10.1111/dgd.12427"}},{"identifier":{"@type":"PMID","@value":"29520762"}},{"identifier":{"@type":"URI","@value":"https://search.jamas.or.jp/link/ui/2019024059"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"Cooperation of Sall4 and Sox8 transcription factors in the regulation of the chicken <i>Sox3</i> gene during otic placode development"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:p>To elucidate the transcriptional regulation that underlies specification of the otic placode, we investigated the <jats:italic>Sox3</jats:italic> downstream enhancer Otic1 of the chicken, the activity of which is restricted to and distributed across the entire otic placode. The 181‐bp Otic1 enhancer sequence was dissected into a 68‐bp minimal activating sequence, which exhibited dimer enhancer activity in the otic placode and cephalic neural crest, and this was further reduced to a 25‐bp Otic1 core sequence, which also showed octamer enhancer activity in the same regions. The Otic1 core octamer was activated by the combined action of Sall4 and the SoxE transcription factors (<jats:styled-content style=\"fixed-case\">TF</jats:styled-content>s) Sox8 or Sox9. Binding of Sall4, Sox8 and Sox9 to the Otic1 sequence in embryonic tissues was confirmed by Ch<jats:styled-content style=\"fixed-case\">IP</jats:styled-content>‐<jats:styled-content style=\"fixed-case\">qPCR</jats:styled-content> analysis. The core‐adjoining 3′ side sequences of Otic1 augmented its enhancer activity, while inclusion of the <jats:styled-content style=\"fixed-case\">CAGGTG</jats:styled-content> sequence in the immediate 3′ end of the 68‐bp sequence repressed its enhancer activity outside the otic placode. The <jats:styled-content style=\"fixed-case\">CAGGTG</jats:styled-content> sequence likely serves as the binding sites of the repressor <jats:styled-content style=\"fixed-case\">TF</jats:styled-content>s δ<jats:styled-content style=\"fixed-case\">EF</jats:styled-content>1 (Zeb1), Sip1 (Zeb2), and Snail2, all of which are expressed in the cephalic neural crest but not in the otic placode. Therefore, the combination of Sall4‐Sox8‐dependent activation and <jats:styled-content style=\"fixed-case\">CAGGTG</jats:styled-content> sequence‐dependent repression determines otic placode development. Although the Otic1 sequence is not conserved in mammals or fishes, the activation mechanism is, as Otic1 was also activated in otic placode tissues developed from mouse embryonic stem cells and transient transgenic zebrafish embryos.</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380004235502948620","@type":"Researcher","foaf:name":[{"@value":"Yu Okamoto"}],"jpcoar:affiliationName":[{"@value":"Graduate School of Frontier Biosciences Osaka University  Osaka Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380004235502948737","@type":"Researcher","foaf:name":[{"@value":"Naoko Nishimura"}],"jpcoar:affiliationName":[{"@value":"Graduate School of Frontier Biosciences Osaka University  Osaka Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380004235502948746","@type":"Researcher","foaf:name":[{"@value":"Kazunari Matsuda"}],"jpcoar:affiliationName":[{"@value":"Graduate School of Frontier Biosciences Osaka University  Osaka Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380004235502948614","@type":"Researcher","foaf:name":[{"@value":"Deshani C. Ranawakage"}],"jpcoar:affiliationName":[{"@value":"School of Environmental Science and Engineering Kochi University of Technology  Kochi Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1420001326214743680","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"90263334"},{"@type":"NRID","@value":"1000090263334"},{"@type":"NRID","@value":"9000020221654"},{"@type":"NRID","@value":"9000000187581"},{"@type":"NRID","@value":"9000008109592"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/kamachi_yusuke"}],"foaf:name":[{"@value":"Yusuke Kamachi"}],"jpcoar:affiliationName":[{"@value":"School of Environmental Science and Engineering Kochi University of Technology  Kochi Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1420001326234553088","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"70127083"},{"@type":"NRID","@value":"1000070127083"},{"@type":"CINII_AUTHOR_ID","@value":"DA00782142"},{"@type":"URI","@value":"https://ci.nii.ac.jp/author/DA00782142#entity"},{"@type":"URI","@value":"https://viaf.org/viaf/NII%7CDA00782142"},{"@type":"NRID","@value":"9000382636922"},{"@type":"NRID","@value":"9000000187580"},{"@type":"NRID","@value":"9000018350180"},{"@type":"NRID","@value":"9000001242175"},{"@type":"NRID","@value":"9000020694201"},{"@type":"NRID","@value":"9000004724675"},{"@type":"NRID","@value":"9000014216514"},{"@type":"NRID","@value":"9000018475222"},{"@type":"NRID","@value":"9000376925318"},{"@type":"NRID","@value":"9000007167252"},{"@type":"NRID","@value":"9000003442131"},{"@type":"NRID","@value":"9000398300675"},{"@type":"NRID","@value":"9000242691274"},{"@type":"NRID","@value":"9000398300658"},{"@type":"NRID","@value":"9000008797715"},{"@type":"NRID","@value":"9000382636913"},{"@type":"NRID","@value":"9000364830778"},{"@type":"NRID","@value":"9000004724175"},{"@type":"NRID","@value":"9000020678789"},{"@type":"NRID","@value":"9000020221710"},{"@type":"NRID","@value":"9000364736342"},{"@type":"NRID","@value":"9000409467411"},{"@type":"NRID","@value":"9000356489046"},{"@type":"NRID","@value":"9000364833247"},{"@type":"NRID","@value":"9000391985833"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/read0042825"}],"foaf:name":[{"@value":"Hisato Kondoh"}],"jpcoar:affiliationName":[{"@value":"Graduate School of Frontier Biosciences Osaka University  Osaka Japan"},{"@value":"Faculty of Life Sciences Kyoto Sangyo University  Kyoto Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1420564276167168896","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"80346147"},{"@type":"NRID","@value":"1000080346147"},{"@type":"ORCID","@value":"0000-0002-8014-5749"},{"@type":"NRID","@value":"9000002109807"},{"@type":"NRID","@value":"9000018475223"},{"@type":"NRID","@value":"9000020221699"},{"@type":"NRID","@value":"9000409467407"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/soxgene_06948"}],"foaf:name":[{"@value":"Masanori Uchikawa"}],"jpcoar:affiliationName":[{"@value":"Graduate School of Frontier Biosciences Osaka University  Osaka Japan"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"00121592"},{"@type":"EISSN","@value":"1440169X"}],"prism:publicationName":[{"@value":"Development, Growth & Differentiation"}],"dc:publisher":[{"@value":"Wiley"}],"prism:publicationDate":"2018-03-08","prism:volume":"60","prism:number":"3","prism:startingPage":"133","prism:endingPage":"145"},"reviewed":"false","dc:rights":["http://onlinelibrary.wiley.com/termsAndConditions#vor"],"url":[{"@id":"https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fdgd.12427"},{"@id":"https://onlinelibrary.wiley.com/doi/pdf/10.1111/dgd.12427"},{"@id":"https://search.jamas.or.jp/link/ui/2019024059"}],"createdAt":"2018-03-09","modifiedAt":"2023-09-24","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=SOXE%20Transcription%20Factors","dc:title":"SOXE Transcription Factors"},{"@id":"https://cir.nii.ac.jp/all?q=SOXB1%20Transcription%20Factors","dc:title":"SOXB1 Transcription Factors"},{"@id":"https://cir.nii.ac.jp/all?q=Animals","dc:title":"Animals"},{"@id":"https://cir.nii.ac.jp/all?q=Gene%20Expression%20Regulation,%20Developmental","dc:title":"Gene Expression Regulation, 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from a common field to individual placodes"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951795073006464","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Derivation of completely cell culture-derived mice from early-passage embryonic stem cells."}]},{"@id":"https://cir.nii.ac.jp/crid/1364233269551921792","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Okihiro syndrome is caused by SALL4 mutations"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233270410647040","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Overexpression of Snail family members highlights their ability to promote chick neural crest formation"}]},{"@id":"https://cir.nii.ac.jp/crid/1520009407510619904","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"B1 and B2 Sox gene expression during neural plate development in chicken and mouse embryos: universal 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