{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360009142707660672.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1101/2021.04.02.438176"}},{"identifier":{"@type":"URI","@value":"https://syndication.highwire.org/content/doi/10.1101/2021.04.02.438176"}},{"identifier":{"@type":"DOI","@value":"10.3389/fpls.2021.680151"}},{"identifier":{"@type":"URI","@value":"https://www.frontiersin.org/articles/10.3389/fpls.2021.680151/full"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"Transcriptomic analysis of resistant and susceptible responses in a new model root-knot nematode infection system using\n                  <i>Solanum torvum</i>\n                  and\n                  <i>Meloidogyne arenaria</i>"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:title>ABSTRACT</jats:title>\n                <jats:p>\n                  Root-knot nematodes (RKNs) are among the most devastating pests in agriculture.\n                  <jats:italic>Solanum torvum</jats:italic>\n                  Sw. (turkey berry) has been used as a rootstock for eggplant (aubergine) cultivation because of its resistance to RKNs, including\n                  <jats:italic>Meloidogyne incognita</jats:italic>\n                  and\n                  <jats:italic>M. arenaria</jats:italic>\n                  . We previously found that a pathotype of\n                  <jats:italic>M. arenaria</jats:italic>\n                  , A2-J, is able to infect and propagate in\n                  <jats:italic>S. torvum. In vitro</jats:italic>\n                  infection assays showed that\n                  <jats:italic>S. torvum</jats:italic>\n                  induces the accumulation of brown pigments during avirulent pathotype A2-O infection, but not during virulent A2-J infection. This experimental system is advantageous because resistant and susceptible responses can be distinguished within a few days, and because a single plant genome can yield information about both resistant and susceptible responses. Comparative RNA-sequencing analysis of\n                  <jats:italic>S. torvum</jats:italic>\n                  inoculated with A2-J and A2-O at early stages of infection was used to parse the specific resistance and susceptible responses. Infection with A2-J did not induce statistically significant changes in gene expression within one day post-inoculation (DPI), but afterward, A2-J specifically induced the expression of chalcone synthase, spermidine synthase, and genes related to cell wall modification and transmembrane transport. Infection with A2-O rapidly induced the expression of genes encoding class III peroxidases, sesquiterpene synthases, and fatty acid desaturases at 1 DPI, followed by genes involved in defense, hormone signaling, and the biosynthesis of lignin at 3 DPI. Both isolates induced the expression of suberin biosynthetic genes, which may be triggered by wounding during nematode infection. Histochemical analysis revealed that A2-O, but not A2-J, induced lignin accumulation at the root tip, suggesting that physical reinforcement of cell walls with lignin is an important defense response against nematodes. The\n                  <jats:italic>S. torvum</jats:italic>\n                  -RKN system can provide a molecular basis for understanding plant-nematode interactions.\n                </jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1420845751167859456","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"90842071"},{"@type":"NRID","@value":"1000090842071"},{"@type":"NRID","@value":"9000412099751"},{"@type":"NRID","@value":"9000411998675"},{"@type":"NRID","@value":"9000398162005"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/kazukisato"}],"foaf:name":[{"@value":"Kazuki Sato"}]},{"@id":"https://cir.nii.ac.jp/crid/1420845751138399360","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"30355458"},{"@type":"NRID","@value":"1000030355458"},{"@type":"NRID","@value":"9000002672693"},{"@type":"NRID","@value":"9000254603608"},{"@type":"NRID","@value":"9000254602692"},{"@type":"NRID","@value":"9000415420164"},{"@type":"NRID","@value":"9000001502384"},{"@type":"NRID","@value":"9000345192245"},{"@type":"NRID","@value":"9000258082273"},{"@type":"NRID","@value":"9000018278593"},{"@type":"NRID","@value":"9000256469822"},{"@type":"NRID","@value":"9000406024734"},{"@type":"NRID","@value":"9000399553919"},{"@type":"NRID","@value":"9000256469887"},{"@type":"NRID","@value":"9000405891291"},{"@type":"NRID","@value":"9000347085374"},{"@type":"NRID","@value":"9000256575244"},{"@type":"NRID","@value":"9000003077360"},{"@type":"NRID","@value":"9000391408166"},{"@type":"NRID","@value":"9000412099744"},{"@type":"NRID","@value":"9000411950623"},{"@type":"NRID","@value":"9000383068297"},{"@type":"NRID","@value":"9000258082332"},{"@type":"NRID","@value":"9000021075243"},{"@type":"NRID","@value":"9000375908545"},{"@type":"NRID","@value":"9000345336603"},{"@type":"NRID","@value":"9000411118694"},{"@type":"NRID","@value":"9000399376582"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/7654nematode7654"}],"foaf:name":[{"@value":"Taketo Uehara"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660800","@type":"Researcher","foaf:name":[{"@value":"Julia Holbein"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660930","@type":"Researcher","foaf:name":[{"@value":"Yuko Sasaki-Sekimoto"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660418","@type":"Researcher","foaf:name":[{"@value":"Pamela Gan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660672","@type":"Researcher","foaf:name":[{"@value":"Takahiro Bino"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660547","@type":"Researcher","foaf:name":[{"@value":"Katsushi Yamaguchi"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660544","@type":"Researcher","foaf:name":[{"@value":"Yasunori Ichihashi"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660545","@type":"Researcher","foaf:name":[{"@value":"Noriko Maki"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660803","@type":"Researcher","foaf:name":[{"@value":"Shuji Shigenobu"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660802","@type":"Researcher","foaf:name":[{"@value":"Hiroyuki Ohta"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660417","@type":"Researcher","foaf:name":[{"@value":"Rochus B. Franke"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660674","@type":"Researcher","foaf:name":[{"@value":"Shahid Siddique"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660416","@type":"Researcher","foaf:name":[{"@value":"Florian M. W. Grundler"}]},{"@id":"https://cir.nii.ac.jp/crid/1380009142707660673","@type":"Researcher","foaf:name":[{"@value":"Takamasa Suzuki"}]},{"@id":"https://cir.nii.ac.jp/crid/1420845751166412416","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"80548975"},{"@type":"NRID","@value":"1000080548975"},{"@type":"NRID","@value":"9000003864460"},{"@type":"NRID","@value":"9000391941450"},{"@type":"NRID","@value":"9000391941942"},{"@type":"NRID","@value":"9000010224039"},{"@type":"NRID","@value":"9000391938884"},{"@type":"NRID","@value":"9000391924574"},{"@type":"NRID","@value":"9000391552004"},{"@type":"NRID","@value":"9000001132812"},{"@type":"NRID","@value":"9000391933584"},{"@type":"NRID","@value":"9000391950962"},{"@type":"NRID","@value":"9000258093347"},{"@type":"NRID","@value":"9000391917610"},{"@type":"NRID","@value":"9000413498737"},{"@type":"NRID","@value":"9000364988228"},{"@type":"NRID","@value":"9000364988174"},{"@type":"NRID","@value":"9000391946942"},{"@type":"NRID","@value":"9000391933051"},{"@type":"NRID","@value":"9000391920775"},{"@type":"NRID","@value":"9000391945545"},{"@type":"NRID","@value":"9000391943465"},{"@type":"NRID","@value":"9000391928778"},{"@type":"NRID","@value":"9000398612050"},{"@type":"NRID","@value":"9000391945562"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/yasuhirokadota0407"}],"foaf:name":[{"@value":"Yasuhiro Kadota"}]},{"@id":"https://cir.nii.ac.jp/crid/1420564276171783936","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"20425630"},{"@type":"NRID","@value":"1000020425630"},{"@type":"NRID","@value":"9000018797907"},{"@type":"NRID","@value":"9000004414178"},{"@type":"NRID","@value":"9000329010047"},{"@type":"NRID","@value":"9000408681753"},{"@type":"NRID","@value":"9000391937676"},{"@type":"NRID","@value":"9000391921699"},{"@type":"NRID","@value":"9000415326641"},{"@type":"NRID","@value":"9000408613197"},{"@type":"NRID","@value":"9000414761436"},{"@type":"NRID","@value":"9000395364561"},{"@type":"NRID","@value":"9000412565315"},{"@type":"NRID","@value":"9000024144192"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/kenshirasu"}],"foaf:name":[{"@value":"Ken Shirasu"}]}],"publication":{"publicationIdentifier":[{"@type":"EISSN","@value":"1664462X"}],"prism:publicationName":[{"@value":"Frontiers in Plant Science"}],"dc:publisher":[{"@value":"openRxiv"}],"prism:publicationDate":"2021-04-02","prism:volume":"12"},"reviewed":"false","dc:rights":["http://creativecommons.org/licenses/by-nc-nd/4.0/"],"url":[{"@id":"https://syndication.highwire.org/content/doi/10.1101/2021.04.02.438176"},{"@id":"https://www.frontiersin.org/articles/10.3389/fpls.2021.680151/full"}],"createdAt":"2021-04-02","modifiedAt":"2026-01-15","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=580","dc:title":"580"},{"@id":"https://cir.nii.ac.jp/all?q=Plant%20biology","dc:title":"Plant biology"},{"@id":"https://cir.nii.ac.jp/all?q=Agricultural","dc:title":"Agricultural"},{"@id":"https://cir.nii.ac.jp/all?q=plant-parasitic%20nematode","dc:title":"plant-parasitic nematode"},{"@id":"https://cir.nii.ac.jp/all?q=Turkey%20berry","dc:title":"Turkey berry"},{"@id":"https://cir.nii.ac.jp/all?q=Veterinary%20and%20Food%20Sciences","dc:title":"Veterinary and Food Sciences"},{"@id":"https://cir.nii.ac.jp/all?q=Plant%20Biology","dc:title":"Plant Biology"},{"@id":"https://cir.nii.ac.jp/all?q=Plant%20culture","dc:title":"Plant culture"},{"@id":"https://cir.nii.ac.jp/all?q=Biological%20Sciences","dc:title":"Biological Sciences"},{"@id":"https://cir.nii.ac.jp/all?q=Crop%20and%20pasture%20production","dc:title":"Crop and pasture production"},{"@id":"https://cir.nii.ac.jp/all?q=SB1-1110","dc:title":"SB1-1110"},{"@id":"https://cir.nii.ac.jp/all?q=Infectious%20Diseases","dc:title":"Infectious Diseases"},{"@id":"https://cir.nii.ac.jp/all?q=comparative%20transcriptomics","dc:title":"comparative transcriptomics"},{"@id":"https://cir.nii.ac.jp/all?q=lignin%20deposition","dc:title":"lignin deposition"},{"@id":"https://cir.nii.ac.jp/all?q=Genetics","dc:title":"Genetics"},{"@id":"https://cir.nii.ac.jp/all?q=2.1%20Biological%20and%20endogenous%20factors","dc:title":"2.1 Biological and endogenous factors"},{"@id":"https://cir.nii.ac.jp/all?q=Aetiology","dc:title":"Aetiology"},{"@id":"https://cir.nii.ac.jp/all?q=plant%20immunity","dc:title":"plant immunity"},{"@id":"https://cir.nii.ac.jp/all?q=Infection","dc:title":"Infection"}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040000782014472192","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"19H02962"},{"@type":"JGN","@value":"JP19H02962"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19H02962/"}],"notation":[{"@language":"ja","@value":"未利用遺伝資源を活用した線虫抵抗性機構の解明と革新的接ぎ木による線虫制御技術開発"},{"@language":"en","@value":"Elucidation of nematode resistance mechanisms and development of nematode control technology by innovative grafting using unutilized genetic resources"}]},{"@id":"https://cir.nii.ac.jp/crid/1040282256936114432","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"17H06172"},{"@type":"JGN","@value":"JP17H06172"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17H06172/"}],"notation":[{"@language":"ja","@value":"植物と病原体の攻防における分子機構"},{"@language":"en","@value":"Molecular elucidation of plant-pathogen interactions"}]},{"@id":"https://cir.nii.ac.jp/crid/1040848250603560704","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"19J00655"},{"@type":"JGN","@value":"JP19J00655"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19J00655/"}],"notation":[{"@language":"ja","@value":"植物寄生線虫による植物免疫抑制機構の解明"}]},{"@id":"https://cir.nii.ac.jp/crid/1040848250649233920","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"20H02994"},{"@type":"JGN","@value":"JP20H02994"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-20H02994/"}],"notation":[{"@language":"ja","@value":"植物による線虫認識機構の解明"},{"@language":"en","@value":"The molecular basis of the recognition of nematodes by plants"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360004234778816768","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Sclareol Induces Plant Resistance to Root-Knot Nematode 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lycopersicum"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620546705024","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Differential expression within a family of novel wound-induced genes in potato"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620857623168","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Role of Tomato Lipoxygenase D in Wound-Induced Jasmonate Biosynthesis and Plant Immunity to Insect Herbivores"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292621384709376","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Solanum torvum responses to the root-knot nematode Meloidogyne incognita"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292621485187712","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Root Knot Nematode Resistance Gene <i>Mi</i> from Tomato Is a Member of the Leucine Zipper, Nucleotide Binding, Leucine-Rich Repeat Family of Plant Genes"}]},{"@id":"https://cir.nii.ac.jp/crid/1360565167542745472","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Vascularization and nutrient delivery at root-knot nematode feeding sites in host roots"}]},{"@id":"https://cir.nii.ac.jp/crid/1360565168303467520","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Diverse functions and reactions of class <scp>III</scp> peroxidases"}]},{"@id":"https://cir.nii.ac.jp/crid/1360567185743966592","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Differences in parasitism of <i>Meloidogyne incognita</i> and two genotypes of <i>M. arenaria</i> on <i>Solanum torvum</i> in Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574092893050496","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"InterProScan 5: 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