{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360011142932984576.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1093/molbev/msy096"}},{"identifier":{"@type":"URI","@value":"http://academic.oup.com/mbe/article-pdf/35/6/1547/25091958/msy096.pdf"}},{"identifier":{"@type":"PMID","@value":"29722887"}}],"dc:title":[{"@value":"MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms"}],"description":[{"notation":[{"@value":"The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge."}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380011142932984449","@type":"Researcher","foaf:name":[{"@value":"Sudhir Kumar"}],"jpcoar:affiliationName":[{"@value":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA"},{"@value":"Department of Biology, Temple University, Philadelphia, PA"},{"@value":"Center for Excellence in Genome Medicine and Research, King Abdulaziz University, Jeddah, Saudi Arabia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011142932984577","@type":"Researcher","foaf:name":[{"@value":"Glen Stecher"}],"jpcoar:affiliationName":[{"@value":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011142932984450","@type":"Researcher","foaf:name":[{"@value":"Michael Li"}],"jpcoar:affiliationName":[{"@value":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011142932984578","@type":"Researcher","foaf:name":[{"@value":"Christina Knyaz"}],"jpcoar:affiliationName":[{"@value":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011142932984448","@type":"Researcher","foaf:name":[{"@value":"Koichiro Tamura"}],"jpcoar:affiliationName":[{"@value":"Research Center for Genomics and Bioinformatics, Tokyo Metropolitan University, Hachioji, Japan"},{"@value":"Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Japan"}]}],"contributor":[{"@id":"https://cir.nii.ac.jp/crid/1380011142932984576","@type":"Researcher","foaf:name":[{"@value":"Fabia Ursula Battistuzzi"}],"role":"editor"}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"07374038"},{"@type":"EISSN","@value":"15371719"}],"prism:publicationName":[{"@value":"Molecular Biology and Evolution"}],"dc:publisher":[{"@value":"Oxford University Press (OUP)"}],"prism:publicationDate":"2018-05-02","prism:volume":"35","prism:number":"6","prism:startingPage":"1547","prism:endingPage":"1549"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","dc:rights":["http://academic.oup.com/journals/pages/about_us/legal/notices"],"url":[{"@id":"http://academic.oup.com/mbe/article-pdf/35/6/1547/25091958/msy096.pdf"}],"createdAt":"2018-05-01","modifiedAt":"2019-10-17","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Evolution,%20Molecular","dc:title":"Evolution, Molecular"},{"@id":"https://cir.nii.ac.jp/all?q=Genetic%20Techniques","dc:title":"Genetic Techniques"},{"@id":"https://cir.nii.ac.jp/all?q=Phylogeny","dc:title":"Phylogeny"},{"@id":"https://cir.nii.ac.jp/all?q=Software","dc:title":"Software"}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1050004953557517440","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Isolation of Native Arbuscular Mycorrhizal Fungi within Young Thalli of the Liverwort Marchantia paleacea"}]},{"@id":"https://cir.nii.ac.jp/crid/1050007359712779776","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Phylogeny and revision of the ‘Cubitermes complex’ termites(Termitidae: Cubitermitinae)"},{"@value":"Phylogeny and revision of the ‘\n                    <scp>\n                      <i>Cubitermes</i>\n                    </scp>\n                    complex’ termites (\n                    <scp>Termitidae</scp>\n                    :\n                    <scp>Cubitermitinae</scp>\n                    )"}]},{"@id":"https://cir.nii.ac.jp/crid/1050008445593416576","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Evolution of the primate glutamate taste sensor from a nucleotide sensor"}]},{"@id":"https://cir.nii.ac.jp/crid/1050008832594163072","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Do colour-morphs of an amphidromous goby represent different species? Taxonomy of Lentipes (Gobiiformes) from Japan and Palawan, Philippines, with phylogenomic approaches"},{"@value":"Do colour-morphs of an amphidromous goby represent different species? Taxonomy of <i>Lentipes</i> (Gobiiformes) from Japan and Palawan, Philippines, with phylogenomic approaches"}]},{"@id":"https://cir.nii.ac.jp/crid/1050009640138337664","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Tricin Biosynthesis and Bioengineering"}]},{"@id":"https://cir.nii.ac.jp/crid/1050011540586527232","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"A second capsidless hadakavirus strain with 10 positive-sense single-stranded RNA genomic segments from Fusarium nygamai"}]},{"@id":"https://cir.nii.ac.jp/crid/1050011771467488640","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Evolution of Epidermal Growth Factor (EGF)-like and Zona Pellucida Domains Containing Shell Matrix Proteins in 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resistance"}]},{"@id":"https://cir.nii.ac.jp/crid/1050016184239596416","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Genetic basis of lineage-specific evolution of fruit traits in hexaploid persimmon"},{"@value":"Genetic basis of lineage-specific evolution of fruit traits in hexaploidy persimmon"}]},{"@id":"https://cir.nii.ac.jp/crid/1050016526892336896","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Pathological investigation and viral antigen distribution of emerging African swine fever in Vietnam"}]},{"@id":"https://cir.nii.ac.jp/crid/1050016526892379904","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Pathology of the outbreak of subgenotype 2.5 classical swine fever virus in northern 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Iwasaki’s snail-eating snake Pareas iwasakii, with a note on morphological variations of Paradistomum megareceptaculum (Tamura, 1941)"}]},{"@id":"https://cir.nii.ac.jp/crid/1050019822484653184","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Confirmation of Neoporphyra cf. dentata on Shikinejima, Izu Islands, southcentral Japan, and comparison with co-occurring Neoporphyra haitanensis"},{"@value":"Confirmation of <i>Neoporphyra</i> cf. <i>dentata</i> on <scp>Shikinejima</scp>, <scp>Izu Islands</scp>, southcentral <scp>Japan</scp>, and comparison with co‐occurring <i>Neoporphyra haitanensis</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1050020984037464832","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Structural basis for hepatitis B virus restriction by a viral receptor homologue"}]},{"@id":"https://cir.nii.ac.jp/crid/1050021016848121728","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"The First Case of a Cat Infected with Burkholderia pseudomultivorans, a Member of the Burkholderia cepacia Complex"}]},{"@id":"https://cir.nii.ac.jp/crid/1050021138664270976","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Isolation and Characterization of Human Gut Bacteria Capable of Extracellular Electron Transport by Electrochemical Techniques"}]},{"@id":"https://cir.nii.ac.jp/crid/1050022476722416128","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Lycopodium root meristem dynamics supports homology between shoots and roots in lycophytes"},{"@value":"<i>Lycopodium</i> root meristem 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nitrification"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031472834304","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"The threatened Pookila (Pseudomys novaehollandiae) hosts a diverse macrobiome of arthropods at varying risks of co-extinction"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031473034624","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Mitochondrial phylogeny and distribution of cytoplasmic male sterility-associated genes in Beta vulgaris"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031473512064","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Serological characterization of lineage II insect-specific flaviviruses compared with pathogenic mosquito-borne flaviviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031473797120","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Isolation and characterization of distinct Rotavirus A in bat and rodent hosts"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031474057472","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Methyloradius palustris gen. nov., sp. nov., a methanol-oxidizing bacterium isolated from snow"}]},{"@id":"https://cir.nii.ac.jp/crid/1050025031474689792","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Nuclear and mitochondrial DNA polymorphisms suggest introgression contributed to garden beet (Beta vulgaris L.) domestication"}]},{"@id":"https://cir.nii.ac.jp/crid/1050026104513078272","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Nitrospina-like Bacteria Are Dominant Potential Mercury Methylators in Both the Oyashio and Kuroshio Regions of the Western North Pacific"}]},{"@id":"https://cir.nii.ac.jp/crid/1050285299902295936","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with Heliorhodopsin-48C12"},{"@value":"Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium <i>Bellilinea caldifistulae</i> (BcHeR) and Comparison with Heliorhodopsin-48C12"}]},{"@id":"https://cir.nii.ac.jp/crid/1050287142161709568","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Genomic insight into the developmental history of southern highbush blueberry populations"},{"@value":"Genomic insight into the developmental history of southern highbush blueberry popoulations."}]},{"@id":"https://cir.nii.ac.jp/crid/1050287142225151616","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Isolation and characterization of antiprotozoal compound-producing Streptomyces species from Mongolian soils"}]},{"@id":"https://cir.nii.ac.jp/crid/1050287297240548096","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Distribution and genetic variability of young-of-the-year greater amberjack (Seriola dumerili) in the East China Sea"}]},{"@id":"https://cir.nii.ac.jp/crid/1050287673798626688","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Biochemical characterization of Bombyx mori α‐N‐acetylgalactosaminidase belonging to the glycoside hydrolase family 31"},{"@value":"Biochemical characterization of\n                    <scp>\n                      <i>Bombyx mori</i>\n                      α‐\n                      <i>N</i>\n                    </scp>\n                    ‐acetylgalactosaminidase belonging to the glycoside hydrolase family 31"},{"@value":"Biochemical characterization of Bombyx mori α-N-acetylgalactosaminidase belonging to the glycoside hydrolase family 31"}]},{"@id":"https://cir.nii.ac.jp/crid/1050288292926008576","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1050289687357908224","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Heterogeneity of synonymous substitution rates in the Xenopus frog genome"}]},{"@id":"https://cir.nii.ac.jp/crid/1050290163809049600","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza"},{"@value":"<i>De novo</i> genome assembly and <i>in natura</i> epigenomics reveal salinity‐induced DNA methylation in the mangrove tree <i>Bruguiera gymnorhiza</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1050290769962355328","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"The role of diverse LURE-type cysteine-rich peptides as signaling molecules in plant reproduction"}]},{"@id":"https://cir.nii.ac.jp/crid/1050290769991836544","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Phylogeography of the Japanese greater horseshoe bat Rhinolophus nippon (Mammalia: Chiroptera) in Northeast Asia: New insight into the monophyly of the Japanese populations"},{"@value":"Phylogeography of the Japanese greater horseshoe bat <i>Rhinolophus nippon</i> (Mammalia: Chiroptera) in Northeast Asia: New insight into the monophyly of the Japanese populations"}]},{"@id":"https://cir.nii.ac.jp/crid/1050294045372221312","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Stars in subtropical Japan: a new gregarious Meteorus species (Hymenoptera, Braconidae, Euphorinae) constructs enigmatic star-shaped pendulous communal cocoons"}]},{"@id":"https://cir.nii.ac.jp/crid/1050294252784541312","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Monotreme-Specific Conserved Putative Proteins Derived from Retroviral Reverse Transcriptase"}]},{"@id":"https://cir.nii.ac.jp/crid/1050294407570981376","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Taxonomic accounts and phylogenetic positions of the Far East Asian centipedes Scolopocryptops elegans and S. curtus (Chilopoda: Scolopendromorpha)"}]},{"@id":"https://cir.nii.ac.jp/crid/1050295658321931904","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Analysis of human clinical and environmental Leptospira to elucidate the eco-epidemiology of leptospirosis in Yaeyama, subtropical Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1050297039851613184","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Ongoing Rapid Evolution of a Post-Y Region Revealed by Chromosome-Scale Genome Assembly of a Hexaploid Monoecious Persimmon (Diospyros kaki)"},{"@value":"Ongoing rapid evolution of a post-Y region revealed by chromosome-scale genome assembly of a hexaploid monoecious persimmon (\n                  <i>Diospyros kaki</i>\n                  )"}]},{"@id":"https://cir.nii.ac.jp/crid/1050297372150886144","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"A tonoplast‐localized magnesium transporter is crucial for stomatal opening in Arabidopsis under high Mg2+ 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