{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360011145087229952.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1111/nph.15090"}},{"identifier":{"@type":"URI","@value":"https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111%2Fnph.15090"}},{"identifier":{"@type":"URI","@value":"https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15090"}},{"identifier":{"@type":"URI","@value":"https://onlinelibrary.wiley.com/doi/full-xml/10.1111/nph.15090"}},{"identifier":{"@type":"URI","@value":"https://nph.onlinelibrary.wiley.com/doi/am-pdf/10.1111/nph.15090"}},{"identifier":{"@type":"URI","@value":"https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15090"}}],"dc:title":[{"@value":"Class C <scp>ARF</scp>s evolved before the origin of land plants and antagonize differentiation and developmental transitions in <i>Marchantia polymorpha</i>"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:title>Summary</jats:title><jats:p>\n<jats:list list-type=\"bullet\">\n\n<jats:list-item><jats:p>A plethora of developmental and physiological processes in land plants is influenced by auxin, to a large extent via alterations in gene expression by <jats:styled-content style=\"fixed-case\">AUXIN RESPONSE FACTOR</jats:styled-content>s (<jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>s). The canonical auxin transcriptional response system is a land plant innovation, however, charophycean algae possess orthologues of at least some classes of <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content> and AUXIN/INDOLE‐3‐ACETIC ACID (<jats:styled-content style=\"fixed-case\">AUX</jats:styled-content>/<jats:styled-content style=\"fixed-case\">IAA</jats:styled-content>) genes, suggesting that elements of the canonical land plant system existed in an ancestral alga.</jats:p></jats:list-item>\n\n<jats:list-item><jats:p>We reconstructed the phylogenetic relationships between streptophyte <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content> and <jats:styled-content style=\"fixed-case\">AUX</jats:styled-content>/<jats:styled-content style=\"fixed-case\">IAA</jats:styled-content> genes and functionally characterized the solitary class C <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>, Mp<jats:italic><jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>3</jats:italic>, in <jats:italic>Marchantia polymorpha</jats:italic>.</jats:p></jats:list-item>\n\n<jats:list-item><jats:p>Phylogenetic analyses indicate that multiple <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content> classes, including class C <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>s, existed in an ancestral alga. Loss‐ and gain‐of‐function Mp<jats:italic><jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>3</jats:italic> alleles result in pleiotropic effects in the gametophyte, with Mp<jats:italic><jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>3</jats:italic> inhibiting differentiation and developmental transitions in multiple stages of the life cycle. Although loss‐of‐function Mp<jats:italic>arf3</jats:italic> and Mp<jats:italic>mir160</jats:italic> alleles respond to exogenous auxin treatments, strong miR‐resistant Mp<jats:italic><jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>3</jats:italic> alleles are auxin‐insensitive, suggesting that class C <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>s act in a context‐dependent fashion.</jats:p></jats:list-item>\n\n<jats:list-item><jats:p>We conclude that two modules independently evolved to regulate a pre‐existing <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content> transcriptional network. Whereas the auxin‐<jats:styled-content style=\"fixed-case\">TIR</jats:styled-content>1‐<jats:styled-content style=\"fixed-case\">AUX</jats:styled-content>/<jats:styled-content style=\"fixed-case\">IAA</jats:styled-content> pathway evolved to repress class A/B <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content> activity, miR160 evolved to repress class C <jats:styled-content style=\"fixed-case\">ARF</jats:styled-content>s in a dynamic fashion.</jats:p></jats:list-item>\n</jats:list>\n</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380011145087229953","@type":"Researcher","foaf:name":[{"@value":"Eduardo Flores‐Sandoval"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229954","@type":"Researcher","foaf:name":[{"@value":"D. Magnus Eklund"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229952","@type":"Researcher","foaf:name":[{"@value":"Syuan‐Fei Hong"}],"jpcoar:affiliationName":[{"@value":"Institute of Biotechnology National Taiwan University 81, Chang‐Xing ST. Taipei 106 Taiwan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087230081","@type":"Researcher","foaf:name":[{"@value":"John P. Alvarez"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229955","@type":"Researcher","foaf:name":[{"@value":"Tom J. Fisher"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229956","@type":"Researcher","foaf:name":[{"@value":"Edwin R. Lampugnani"}],"jpcoar:affiliationName":[{"@value":"School of BioSciences University of Melbourne Parkville Victoria 3010 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229958","@type":"Researcher","foaf:name":[{"@value":"John F. Golz"}],"jpcoar:affiliationName":[{"@value":"School of BioSciences University of Melbourne Parkville Victoria 3010 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087230080","@type":"Researcher","foaf:name":[{"@value":"Alejandra Vázquez‐Lobo"}],"jpcoar:affiliationName":[{"@value":"CIByC Universidad Autónoma del Estado de Morelos Av. Universidad No. 1001, Colonia Chamilpa CP 62209 Cuernavaca Morelos México"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229959","@type":"Researcher","foaf:name":[{"@value":"Tom Dierschke"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229957","@type":"Researcher","foaf:name":[{"@value":"Shih‐Shun Lin"}],"jpcoar:affiliationName":[{"@value":"Institute of Biotechnology National Taiwan University 81, Chang‐Xing ST. Taipei 106 Taiwan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380011145087229960","@type":"Researcher","foaf:name":[{"@value":"John L. Bowman"}],"jpcoar:affiliationName":[{"@value":"School of Biological Sciences Monash University Clayton, Melbourne Victoria 3800 Australia"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"0028646X"},{"@type":"EISSN","@value":"14698137"}],"prism:publicationName":[{"@value":"New 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