A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

Yang Luo, Masahiro Kanai, Wanson Choi, Xinyi Li, Saori Sakaue, Kenichi Yamamoto, Kotaro Ogawa, Maria Gutierrez-Arcelus, Peter K. Gregersen, Philip E. Stuart, James T. Elder, Lukas Forer, Sebastian Schönherr, Christian Fuchsberger, Albert V. Smith, Jacques Fellay, Mary Carrington, David W. Haas, Xiuqing Guo, Nicholette D. Palmer, Yii-Der Ida Chen, Jerome I. Rotter, Kent D. Taylor, Stephen S. Rich, Adolfo Correa, James G. Wilson, Sekar Kathiresan, Michael H. Cho, Andres Metspalu, Tonu Esko, Yukinori Okada, Buhm Han, Namiko Abe, Gonçalo Abecasis, Francois Aguet, Christine Albert, Laura Almasy, Alvaro Alonso, Seth Ament, Peter Anderson, Pramod Anugu, Deborah Applebaum-Bowden, Kristin Ardlie, Dan Arking, Donna K. Arnett, Allison Ashley-Koch, Stella Aslibekyan, Tim Assimes, Paul Auer, Dimitrios Avramopoulos, Najib Ayas, Adithya Balasubramanian, John Barnard, Kathleen Barnes, R. Graham Barr, Emily Barron-Casella, Lucas Barwick, Terri Beaty, Gerald Beck, Diane Becker, Lewis Becker, Rebecca Beer, Amber Beitelshees, Emelia Benjamin, Takis Benos, Marcos Bezerra, Larry Bielak, Joshua Bis, Thomas Blackwell, John Blangero, Eric Boerwinkle, Donald W. Bowden, Russell Bowler, Jennifer Brody, Ulrich Broeckel, Jai Broome, Deborah Brown, Karen Bunting, Esteban Burchard, Carlos Bustamante, Erin Buth, Brian Cade, Jonathan Cardwell, Vincent Carey, Julie Carrier, Cara Carty, Richard Casaburi, Juan P. Casas Romero, James Casella, Peter Castaldi, Mark Chaffin, Christy Chang, Yi-Cheng Chang, Daniel Chasman, Sameer Chavan, Bo-Juen Chen, Wei-Min Chen, Seung Hoan Choi, Lee-Ming Chuang, Mina Chung, Ren-Hua Chung, Clary Clish, Suzy Comhair, Matthew Conomos, Elaine Cornell, Carolyn Crandall, James Crapo, L. Adrienne Cupples, Joanne Curran, Jeffrey Curtis, Brian Custer, Coleen Damcott, Dawood Darbar, Sean David, Colleen Davis, Michelle Daya, Mariza de Andrade, Lisa de las Fuentes, Paul de Vries, Michael DeBaun, Ranjan Deka, Dawn DeMeo, Scott Devine, Huyen Dinh, Harsha Doddapaneni, Qing Duan, Shannon Dugan-Perez, Ravi Duggirala, Jon Peter Durda, Susan K. Dutcher, Charles Eaton, Lynette Ekunwe, Adel El Boueiz, Patrick Ellinor, Leslie Emery, Serpil Erzurum, Charles Farber, Jesse Farek, Tasha Fingerlin, Matthew Flickinger, Myriam Fornage, Nora Franceschini, Chris Frazar, Mao Fu, Stephanie M. Fullerton, Lucinda Fulton, Stacey Gabriel, Weiniu Gan, Shanshan Gao, Yan Gao, Margery Gass, Heather Geiger, Bruce Gelb, Mark Geraci, Soren Germer, Robert Gerszten, Auyon Ghosh, Richard Gibbs, Chris Gignoux, Mark Gladwin, David Glahn, Stephanie Gogarten, Da-Wei Gong, Harald Goring, Sharon Graw, Kathryn J. Gray, Daniel Grine, Colin Gross, C. Charles Gu, Yue Guan, Namrata Gupta, David M. Haas, Jeff Haessler, Michael Hall, Yi Han, Patrick Hanly, Daniel Harris, Nicola L. Hawley, Jiang He, Ben Heavner, Susan Heckbert, Ryan Hernandez, David Herrington, Craig Hersh, Bertha Hidalgo, James Hixson, Brian Hobbs, John Hokanson, Elliott Hong, Karin Hoth, Chao Hsiung, Jianhong Hu, Yi-Jen Hung, Haley Huston, Chii Min Hwu, Marguerite Ryan Irvin, Rebecca Jackson, Deepti Jain, Cashell Jaquish, Jill Johnsen, Andrew Johnson, Craig Johnson, Rich Johnston, Kimberly Jones, Hyun Min Kang, Robert Kaplan, Sharon Kardia, Shannon Kelly, Eimear Kenny, Michael Kessler, Alyna Khan, Ziad Khan, Wonji Kim, John Kimoff, Greg Kinney, Barbara Konkle, Charles Kooperberg, Holly Kramer, Christoph Lange, Ethan Lange, Leslie Lange, Cathy Laurie, Cecelia Laurie, Meryl LeBoff, Jiwon Lee, Sandra Lee, Wen-Jane Lee, Jonathon LeFaive, David Levine, Dan Levy, Joshua Lewis, Xiaohui Li, Yun Li, Henry Lin, Honghuang Lin, Xihong Lin, Simin Liu, Yongmei Liu, Yu Liu, Ruth J. F. Loos, Steven Lubitz, Kathryn Lunetta, James Luo, Ulysses Magalang, Michael Mahaney, Barry Make, Ani Manichaikul, Alisa Manning, JoAnn Manson, Lisa Martin, Melissa Marton, Susan Mathai, Rasika Mathias, Susanne May, Patrick McArdle, Merry-Lynn McDonald, Sean McFarland, Stephen McGarvey, Daniel McGoldrick, Caitlin McHugh, Becky McNeil, Hao Mei, James Meigs, Vipin Menon, Luisa Mestroni, Ginger Metcalf, Deborah A. Meyers, Emmanuel Mignot, Julie Mikulla, Nancy Min, Mollie Minear, Ryan L. Minster, Braxton D. Mitchell, Matt Moll, Zeineen Momin, May E. Montasser, Courtney Montgomery, Donna Muzny, Josyf C. Mychaleckyj, Girish Nadkarni, Rakhi Naik, Take Naseri, Pradeep Natarajan, Sergei Nekhai, Sarah C. Nelson, Bonnie Neltner, Caitlin Nessner, Deborah Nickerson, Osuji Nkechinyere, Kari North, Jeff O’Connell, Tim O’Connor, Heather Ochs-Balcom, Geoffrey Okwuonu, Allan Pack, David T. Paik, James Pankow, George Papanicolaou, Cora Parker, Gina Peloso, Juan Manuel Peralta, Marco Perez, James Perry, Ulrike Peters, Patricia Peyser, Lawrence S. Phillips, Jacob Pleiness, Toni Pollin, Wendy Post, Julia Powers Becker, Meher Preethi Boorgula, Michael Preuss, Bruce Psaty, Pankaj Qasba, Dandi Qiao, Zhaohui Qin, Nicholas Rafaels, Laura Raffield, Mahitha Rajendran, Vasan S. Ramachandran, D. C. Rao, Laura Rasmussen-Torvik, Aakrosh Ratan, Susan Redline, Robert Reed, Catherine Reeves, Elizabeth Regan, Alex Reiner, Muagututi’a Sefuiva Reupena, Ken Rice, Rebecca Robillard, Nicolas Robine, Dan Roden, Carolina Roselli, Ingo Ruczinski, Alexi Runnels, Pamela Russell, Sarah Ruuska, Kathleen Ryan, Ester Cerdeira Sabino, Danish Saleheen, Shabnam Salimi, Sejal Salvi, Steven Salzberg, Kevin Sandow, Vijay G. Sankaran, Jireh Santibanez, Karen Schwander, David Schwartz, Frank Sciurba, Christine Seidman, Jonathan Seidman, Frédéric Sériès, Vivien Sheehan, Stephanie L. Sherman, Amol Shetty, Aniket Shetty, Wayne Hui-Heng Sheu, M. Benjamin Shoemaker, Brian Silver, Edwin Silverman, Robert Skomro, Jennifer Smith, Josh Smith, Nicholas Smith, Tanja Smith, Sylvia Smoller, Beverly Snively, Michael Snyder, Tamar Sofer, Nona Sotoodehnia, Adrienne M. Stilp, Garrett Storm, Elizabeth Streeten, Jessica Lasky Su, Yun Ju Sung, Jody Sylvia, Adam Szpiro, Daniel Taliun, Hua Tang, Margaret Taub, Matthew Taylor, Simeon Taylor, Marilyn Telen, Timothy A. Thornton, Machiko Threlkeld, Lesley Tinker, David Tirschwell, Sarah Tishkoff, Hemant Tiwari, Catherine Tong, Russell Tracy, Michael Tsai, Dhananjay Vaidya, David Van Den Berg, Peter VandeHaar, Scott Vrieze, Tarik Walker, Robert Wallace, Avram Walts, Fei Fei Wang, Heming Wang, Jiongming Wang, Karol Watson, Jennifer Watt, Daniel E. Weeks, Joshua Weinstock, Bruce Weir, Scott T. Weiss, Lu-Chen Weng, Jennifer Wessel, Cristen Willer, Kayleen Williams, L. Keoki Williams, Carla Wilson, James Wilson, Lara Winterkorn, Quenna Wong, Joseph Wu, Huichun Xu, Lisa Yanek, Ivana Yang, Ketian Yu, Seyedeh Maryam Zekavat, Yingze Zhang, Snow Xueyan Zhao, Wei Zhao, Xiaofeng Zhu, Michael Zody, Sebastian Zoellner, Paul J. McLaren, Soumya Raychaudhuri

doi:10.1038/s41588-021-00935-7

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

DOI PDF Web Site 1 Citations 72 References

Yang Luo
Masahiro Kanai
Wanson Choi
Xinyi Li
Saori Sakaue
Kenichi Yamamoto
Kotaro Ogawa
Maria Gutierrez-Arcelus
Peter K. Gregersen
Philip E. Stuart
James T. Elder
Lukas Forer
Sebastian Schönherr
Christian Fuchsberger
Albert V. Smith
Jacques Fellay
Mary Carrington
David W. Haas
Xiuqing Guo
Nicholette D. Palmer
Yii-Der Ida Chen
Jerome I. Rotter
Kent D. Taylor
Stephen S. Rich
Adolfo Correa
James G. Wilson
Sekar Kathiresan
Michael H. Cho
Andres Metspalu
Tonu Esko
Yukinori Okada
Buhm Han
Namiko Abe
Gonçalo Abecasis
Francois Aguet
Christine Albert
Laura Almasy
Alvaro Alonso
Seth Ament
Peter Anderson
Pramod Anugu
Deborah Applebaum-Bowden
Kristin Ardlie
Dan Arking
Donna K. Arnett
Allison Ashley-Koch
Stella Aslibekyan
Tim Assimes
Paul Auer
Dimitrios Avramopoulos
Najib Ayas
Adithya Balasubramanian
John Barnard
Kathleen Barnes
R. Graham Barr
Emily Barron-Casella
Lucas Barwick
Terri Beaty
Gerald Beck
Diane Becker
Lewis Becker
Rebecca Beer
Amber Beitelshees
Emelia Benjamin
Takis Benos
Marcos Bezerra
Larry Bielak
Joshua Bis
Thomas Blackwell
John Blangero
Eric Boerwinkle
Donald W. Bowden
Russell Bowler
Jennifer Brody
Ulrich Broeckel
Jai Broome
Deborah Brown
Karen Bunting
Esteban Burchard
Carlos Bustamante
Erin Buth
Brian Cade
Jonathan Cardwell
Vincent Carey
Julie Carrier
Cara Carty
Richard Casaburi
Juan P. Casas Romero
James Casella
Peter Castaldi
Mark Chaffin
Christy Chang
Yi-Cheng Chang
Daniel Chasman
Sameer Chavan
Bo-Juen Chen
Wei-Min Chen
Seung Hoan Choi
Lee-Ming Chuang
Mina Chung
Ren-Hua Chung
Clary Clish
Suzy Comhair
Matthew Conomos
Elaine Cornell
Carolyn Crandall
James Crapo
L. Adrienne Cupples
Joanne Curran
Jeffrey Curtis
Brian Custer
Coleen Damcott
Dawood Darbar
Sean David
Colleen Davis
Michelle Daya
Mariza de Andrade
Lisa de las Fuentes
Paul de Vries
Michael DeBaun
Ranjan Deka
Dawn DeMeo
Scott Devine
Huyen Dinh
Harsha Doddapaneni
Qing Duan
Shannon Dugan-Perez
Ravi Duggirala
Jon Peter Durda
Susan K. Dutcher
Charles Eaton
Lynette Ekunwe
Adel El Boueiz
Patrick Ellinor
Leslie Emery
Serpil Erzurum
Charles Farber
Jesse Farek
Tasha Fingerlin
Matthew Flickinger
Myriam Fornage
Nora Franceschini
Chris Frazar
Mao Fu
Stephanie M. Fullerton
Lucinda Fulton
Stacey Gabriel
Weiniu Gan
Shanshan Gao
Yan Gao
Margery Gass
Heather Geiger
Bruce Gelb
Mark Geraci
Soren Germer
Robert Gerszten
Auyon Ghosh
Richard Gibbs
Chris Gignoux
Mark Gladwin
David Glahn
Stephanie Gogarten
Da-Wei Gong
Harald Goring
Sharon Graw
Kathryn J. Gray
Daniel Grine
Colin Gross
C. Charles Gu
Yue Guan
Namrata Gupta
David M. Haas
Jeff Haessler
Michael Hall
Yi Han
Patrick Hanly
Daniel Harris
Nicola L. Hawley
Jiang He
Ben Heavner
Susan Heckbert
Ryan Hernandez
David Herrington
Craig Hersh
Bertha Hidalgo
James Hixson
Brian Hobbs
John Hokanson
Elliott Hong
Karin Hoth
Chao Hsiung
Jianhong Hu
Yi-Jen Hung
Haley Huston
Chii Min Hwu
Marguerite Ryan Irvin
Rebecca Jackson
Deepti Jain
Cashell Jaquish
Jill Johnsen
Andrew Johnson
Craig Johnson
Rich Johnston
Kimberly Jones
Hyun Min Kang
Robert Kaplan
Sharon Kardia
Shannon Kelly
Eimear Kenny
Michael Kessler
Alyna Khan
Ziad Khan
Wonji Kim
John Kimoff
Greg Kinney
Barbara Konkle
Charles Kooperberg
Holly Kramer
Christoph Lange
Ethan Lange
Leslie Lange
Cathy Laurie
Cecelia Laurie
Meryl LeBoff
Jiwon Lee
Sandra Lee
Wen-Jane Lee
Jonathon LeFaive
David Levine
Dan Levy
Joshua Lewis
Xiaohui Li
Yun Li
Henry Lin
Honghuang Lin
Xihong Lin
Simin Liu
Yongmei Liu
Yu Liu
Ruth J. F. Loos
Steven Lubitz
Kathryn Lunetta
James Luo
Ulysses Magalang
Michael Mahaney
Barry Make
Ani Manichaikul
Alisa Manning
JoAnn Manson
Lisa Martin
Melissa Marton
Susan Mathai
Rasika Mathias
Susanne May
Patrick McArdle
Merry-Lynn McDonald
Sean McFarland
Stephen McGarvey
Daniel McGoldrick
Caitlin McHugh
Becky McNeil
Hao Mei
James Meigs
Vipin Menon
Luisa Mestroni
Ginger Metcalf
Deborah A. Meyers
Emmanuel Mignot
Julie Mikulla
Nancy Min
Mollie Minear
Ryan L. Minster
Braxton D. Mitchell
Matt Moll
Zeineen Momin
May E. Montasser
Courtney Montgomery
Donna Muzny
Josyf C. Mychaleckyj
Girish Nadkarni
Rakhi Naik
Take Naseri
Pradeep Natarajan
Sergei Nekhai
Sarah C. Nelson
Bonnie Neltner
Caitlin Nessner
Deborah Nickerson
Osuji Nkechinyere
Kari North
Jeff O’Connell
Tim O’Connor
Heather Ochs-Balcom
Geoffrey Okwuonu
Allan Pack
David T. Paik
James Pankow
George Papanicolaou
Cora Parker
Gina Peloso
Juan Manuel Peralta
Marco Perez
James Perry
Ulrike Peters
Patricia Peyser
Lawrence S. Phillips
Jacob Pleiness
Toni Pollin
Wendy Post
Julia Powers Becker
Meher Preethi Boorgula
Michael Preuss
Bruce Psaty
Pankaj Qasba
Dandi Qiao
Zhaohui Qin
Nicholas Rafaels
Laura Raffield
Mahitha Rajendran
Vasan S. Ramachandran
D. C. Rao
Laura Rasmussen-Torvik
Aakrosh Ratan
Susan Redline
Robert Reed
Catherine Reeves
Elizabeth Regan
Alex Reiner
Muagututi’a Sefuiva Reupena
Ken Rice
Rebecca Robillard
Nicolas Robine
Dan Roden
Carolina Roselli
Ingo Ruczinski
Alexi Runnels
Pamela Russell
Sarah Ruuska
Kathleen Ryan
Ester Cerdeira Sabino
Danish Saleheen
Shabnam Salimi
Sejal Salvi
Steven Salzberg
Kevin Sandow
Vijay G. Sankaran
Jireh Santibanez
Karen Schwander
David Schwartz
Frank Sciurba
Christine Seidman
Jonathan Seidman
Frédéric Sériès
Vivien Sheehan
Stephanie L. Sherman
Amol Shetty
Aniket Shetty
Wayne Hui-Heng Sheu
M. Benjamin Shoemaker
Brian Silver
Edwin Silverman
Robert Skomro
Jennifer Smith
Josh Smith
Nicholas Smith
Tanja Smith
Sylvia Smoller
Beverly Snively
Michael Snyder
Tamar Sofer
Nona Sotoodehnia
Adrienne M. Stilp
Garrett Storm
Elizabeth Streeten
Jessica Lasky Su
Yun Ju Sung
Jody Sylvia
Adam Szpiro
Daniel Taliun
Hua Tang
Margaret Taub
Matthew Taylor
Simeon Taylor
Marilyn Telen
Timothy A. Thornton
Machiko Threlkeld
Lesley Tinker
David Tirschwell
Sarah Tishkoff
Hemant Tiwari
Catherine Tong
Russell Tracy
Michael Tsai
Dhananjay Vaidya
David Van Den Berg
Peter VandeHaar
Scott Vrieze
Tarik Walker
Robert Wallace
Avram Walts
Fei Fei Wang
Heming Wang
Jiongming Wang
Karol Watson
Jennifer Watt
Daniel E. Weeks
Joshua Weinstock
Bruce Weir
Scott T. Weiss
Lu-Chen Weng
Jennifer Wessel
Cristen Willer
Kayleen Williams
L. Keoki Williams
Carla Wilson
James Wilson
Lara Winterkorn
Quenna Wong
Joseph Wu
Huichun Xu
Lisa Yanek
Ivana Yang
Ketian Yu
Seyedeh Maryam Zekavat
Yingze Zhang
Snow Xueyan Zhao
Wei Zhao
Xiaofeng Zhu
Michael Zody
Sebastian Zoellner
Paul J. McLaren
Soumya Raychaudhuri

Journal

Nature Genetics

Nature Genetics 53 (10), 1504-1516, 2021-10

Springer Science and Business Media LLC

A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response

Journal

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