{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360568468329318784.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1038/s41598-019-50076-5"}},{"identifier":{"@type":"URI","@value":"https://www.nature.com/articles/s41598-019-50076-5.pdf"}},{"identifier":{"@type":"URI","@value":"https://www.nature.com/articles/s41598-019-50076-5"}},{"identifier":{"@type":"PMID","@value":"31527702"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"Colletotrichum shisoi sp. nov., an anthracnose pathogen of Perilla frutescens in Japan: molecular phylogenetic, morphological and genomic evidence"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:title>Abstract</jats:title><jats:p>Species of the fungal genus <jats:italic>Colletotrichum</jats:italic> are among the most devastating pathogens of agricultural crops in the world. Based on DNA sequence data (ITS, <jats:italic>GAPDH</jats:italic>, <jats:italic>CHS-1</jats:italic>, <jats:italic>ACT</jats:italic>, <jats:italic>TUB2</jats:italic>) and morphology, we revealed <jats:italic>Colletotrichum</jats:italic> isolates infecting the oil crop <jats:italic>Perilla frutescens</jats:italic>, commonly known as shiso, to represent a previously unknown species of the <jats:italic>C. destructivum</jats:italic> species complex and described it as <jats:italic>C. shisoi</jats:italic>. We found that <jats:italic>C. shisoi</jats:italic> appears to be able to adopt a hemibiotrophic lifestyle, characterised by the formation of biotrophic hyphae followed by severe necrotic lesions on <jats:italic>P. frutescens</jats:italic>, but is less virulent on <jats:italic>Arabidopsis</jats:italic>, compared to its close relative <jats:italic>C. higginsianum</jats:italic> which also belongs to the <jats:italic>C. destructivum</jats:italic> species complex. The genome of <jats:italic>C. shisoi</jats:italic> was sequenced, annotated and its predicted proteome compared with four other <jats:italic>Colletotrichum</jats:italic> species. The predicted proteomes of <jats:italic>C. shisoi</jats:italic> and <jats:italic>C. higginsianum</jats:italic>, share many candidate effectors, which are small, secreted proteins that may contribute to infection. Interestingly, <jats:italic>C. destructivum</jats:italic> species complex-specific secreted proteins showed evidence of increased diversifying selection which may be related to their host specificities.</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380568468329318661","@type":"Researcher","foaf:name":[{"@value":"P. Gan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329317889","@type":"Researcher","foaf:name":[{"@value":"A. Tsushima"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329318801","@type":"Researcher","foaf:name":[{"@value":"R. Hiroyama"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329317763","@type":"Researcher","foaf:name":[{"@value":"M. Narusaka"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329318018","@type":"Researcher","foaf:name":[{"@value":"Y. Takano"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329317636","@type":"Researcher","foaf:name":[{"@value":"Y. Narusaka"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329318799","@type":"Researcher","foaf:name":[{"@value":"M. Kawaradani"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329318144","@type":"Researcher","foaf:name":[{"@value":"U. Damm"}]},{"@id":"https://cir.nii.ac.jp/crid/1380568468329318145","@type":"Researcher","foaf:name":[{"@value":"K. Shirasu"}]}],"publication":{"publicationIdentifier":[{"@type":"EISSN","@value":"20452322"}],"prism:publicationName":[{"@value":"Scientific Reports"}],"dc:publisher":[{"@value":"Springer Science and Business Media LLC"}],"prism:publicationDate":"2019-09-16","prism:volume":"9","prism:number":"1","prism:startingPage":"13349"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","dc:rights":["https://creativecommons.org/licenses/by/4.0","https://creativecommons.org/licenses/by/4.0"],"url":[{"@id":"https://www.nature.com/articles/s41598-019-50076-5.pdf"},{"@id":"https://www.nature.com/articles/s41598-019-50076-5"}],"createdAt":"2019-09-16","modifiedAt":"2022-12-17","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Crops,%20Agricultural","dc:title":"Crops, Agricultural"},{"@id":"https://cir.nii.ac.jp/all?q=Base%20Sequence","dc:title":"Base Sequence"},{"@id":"https://cir.nii.ac.jp/all?q=Proteome","dc:title":"Proteome"},{"@id":"https://cir.nii.ac.jp/all?q=Perilla%20frutescens","dc:title":"Perilla frutescens"},{"@id":"https://cir.nii.ac.jp/all?q=Genomics","dc:title":"Genomics"},{"@id":"https://cir.nii.ac.jp/all?q=Article","dc:title":"Article"},{"@id":"https://cir.nii.ac.jp/all?q=Fungal%20Proteins","dc:title":"Fungal Proteins"},{"@id":"https://cir.nii.ac.jp/all?q=Japan","dc:title":"Japan"},{"@id":"https://cir.nii.ac.jp/all?q=Colletotrichum","dc:title":"Colletotrichum"},{"@id":"https://cir.nii.ac.jp/all?q=Genome,%20Fungal","dc:title":"Genome, Fungal"},{"@id":"https://cir.nii.ac.jp/all?q=Phylogeny","dc:title":"Phylogeny"},{"@id":"https://cir.nii.ac.jp/all?q=Multilocus%20Sequence%20Typing","dc:title":"Multilocus Sequence Typing"},{"@id":"https://cir.nii.ac.jp/all?q=Plant%20Diseases","dc:title":"Plant 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