{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360580237000756608.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1016/j.gpb.2021.12.002"}},{"identifier":{"@type":"URI","@value":"https://api.elsevier.com/content/article/PII:S167202292100259X?httpAccept=text/xml"}},{"identifier":{"@type":"URI","@value":"https://api.elsevier.com/content/article/PII:S167202292100259X?httpAccept=text/plain"}},{"identifier":{"@type":"URI","@value":"https://academic.oup.com/gpb/article-pdf/20/3/536/57582178/gpb_20_3_536.pdf"}}],"dc:title":[{"@value":"KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:title>Abstract</jats:title>\n                  <jats:p>KaKs_Calculator 3.0 is an updated toolkit that is capable of calculating selective pressure on both coding and non-coding sequences. Similar to the nonsynonymous/synonymous substitution rate ratio for coding sequences, selection on non-coding sequences can be quantified as the ratio of non-coding nucleotide substitution rate to synonymous substitution rate of adjacent coding sequences. As testified on empirical data, KaKs_Calculator 3.0 shows effectiveness to detect the strength and mode of selection operated on molecular sequences, accordingly demonstrating its great potential to achieve genome-wide scan of natural selection on diverse sequences and identification of potentially functional elements at a whole-genome scale. The package of KaKs_Calculator 3.0 is freely available for academic use only at https://ngdc.cncb.ac.cn/biocode/tools/BT000001.</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380580237000756608","@type":"Researcher","foaf:name":[{"@value":"Zhang Zhang"}],"jpcoar:affiliationName":[{"@value":"National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing, 100101 , China"},{"@value":"CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing, 100101 , China"},{"@value":"China National Center for Bioinformation , Beijing, 100101 , China"},{"@value":"University of Chinese Academy of Sciences , Beijing, 100049 , China"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"16720229"},{"@type":"EISSN","@value":"22103244"}],"prism:publicationName":[{"@value":"Genomics, Proteomics & Bioinformatics"}],"dc:publisher":[{"@value":"Oxford University Press (OUP)"}],"prism:publicationDate":"2022-01-03","prism:volume":"20","prism:number":"3","prism:startingPage":"536","prism:endingPage":"540"},"reviewed":"false","dc:rights":["https://creativecommons.org/licenses/by/4.0/","https://www.elsevier.com/tdm/userlicense/1.0/","http://creativecommons.org/licenses/by/4.0/"],"url":[{"@id":"https://api.elsevier.com/content/article/PII:S167202292100259X?httpAccept=text/xml"},{"@id":"https://api.elsevier.com/content/article/PII:S167202292100259X?httpAccept=text/plain"},{"@id":"https://academic.oup.com/gpb/article-pdf/20/3/536/57582178/gpb_20_3_536.pdf"}],"createdAt":"2022-01-03","modifiedAt":"2024-05-14","relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360025429415849472","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Comparative genomics highlights the virulence and evolutionary trajectory of white spot syndrome virus"}]},{"@id":"https://cir.nii.ac.jp/crid/1360298754811478144","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Photoreceptor genes in a trechine beetle,\n                  <i>Trechiama kuznetsovi</i>\n                  , living in the upper hypogean zone"}]},{"@id":"https://cir.nii.ac.jp/crid/1390022067667365120","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Massive RNA Editing in Ascetosporean Mitochondria"}]},{"@id":"https://cir.nii.ac.jp/crid/1390864490645072896","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Identification of abiotic stress-responsive genes: a genome-wide analysis of the cytokinin response regulator gene family in rice"}]}],"dataSourceIdentifier":[{"@type":"CROSSREF","@value":"10.1016/j.gpb.2021.12.002"},{"@type":"CROSSREF","@value":"10.1099/jgv.0.002042_references_DOI_P4RgJoChq7UeUVtUPLWhg7o6654"},{"@type":"CROSSREF","@value":"10.1101/2023.02.28.530396_references_DOI_P4RgJoChq7UeUVtUPLWhg7o6654"},{"@type":"CROSSREF","@value":"10.1266/ggs.24-00068_references_DOI_P4RgJoChq7UeUVtUPLWhg7o6654"},{"@type":"CROSSREF","@value":"10.1264/jsme2.me24070_references_DOI_P4RgJoChq7UeUVtUPLWhg7o6654"}]}