{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1360848658338416640.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1038/ismej.2015.176"}},{"identifier":{"@type":"URI","@value":"http://www.nature.com/articles/ismej2015176.pdf"}},{"identifier":{"@type":"URI","@value":"http://www.nature.com/articles/ismej2015176"}},{"identifier":{"@type":"URI","@value":"https://academic.oup.com/ismej/article-pdf/10/4/990/56171449/41396_2016_article_bfismej2015176.pdf"}},{"identifier":{"@type":"PMID","@value":"26418631"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"Heterogeneous composition of key metabolic gene clusters in a vent mussel symbiont population"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:title>Abstract</jats:title>\n               <jats:p>Chemosynthetic symbiosis is one of the successful systems for adapting to a wide range of habitats including extreme environments, and the metabolic capabilities of symbionts enable host organisms to expand their habitat ranges. However, our understanding of the adaptive strategies that enable symbiotic organisms to expand their habitats is still fragmentary. Here, we report that a single-ribotype endosymbiont population in an individual of the host vent mussel, Bathymodiolus septemdierum has heterogeneous genomes with regard to the composition of key metabolic gene clusters for hydrogen oxidation and nitrate reduction. The host individual harbours heterogeneous symbiont subpopulations that either possess or lack the gene clusters encoding hydrogenase or nitrate reductase. The proportions of the different symbiont subpopulations in a host appeared to vary with the environment or with the host’s development. Furthermore, the symbiont subpopulations were distributed in patches to form a mosaic pattern in the gill. Genomic heterogeneity in an endosymbiont population may enable differential utilization of diverse substrates and confer metabolic flexibility. Our findings open a new chapter in our understanding of how symbiotic organisms alter their metabolic capabilities and expand their range of habitats.</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1380848658338416897","@type":"Researcher","foaf:name":[{"@value":"Tetsuro Ikuta"}],"jpcoar:affiliationName":[{"@value":"Department of Marine Biodiversity Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416770","@type":"Researcher","foaf:name":[{"@value":"Yoshihiro Takaki"}],"jpcoar:affiliationName":[{"@value":"Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416773","@type":"Researcher","foaf:name":[{"@value":"Yukiko Nagai"}],"jpcoar:affiliationName":[{"@value":"Department of Marine Biodiversity Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416772","@type":"Researcher","foaf:name":[{"@value":"Shigeru Shimamura"}],"jpcoar:affiliationName":[{"@value":"Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416659","@type":"Researcher","foaf:name":[{"@value":"Miwako Tsuda"}],"jpcoar:affiliationName":[{"@value":"Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416774","@type":"Researcher","foaf:name":[{"@value":"Shinsuke Kawagucci"}],"jpcoar:affiliationName":[{"@value":"Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416899","@type":"Researcher","foaf:name":[{"@value":"Yui Aoki"}],"jpcoar:affiliationName":[{"@value":"Department of Marine Biodiversity Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1420282801210428544","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"60323630"},{"@type":"NRID","@value":"1000060323630"},{"@type":"NRID","@value":"9000345400376"},{"@type":"NRID","@value":"9000000074526"},{"@type":"NRID","@value":"9000018846687"},{"@type":"NRID","@value":"9000411806209"},{"@type":"NRID","@value":"9000020008538"},{"@type":"NRID","@value":"9000389560636"},{"@type":"NRID","@value":"9000016757435"},{"@type":"NRID","@value":"9000000308538"},{"@type":"NRID","@value":"9000019067138"},{"@type":"NRID","@value":"9000022871403"},{"@type":"NRID","@value":"9000022871494"},{"@type":"NRID","@value":"9000000874143"},{"@type":"NRID","@value":"9000019984643"},{"@type":"NRID","@value":"9000253471100"},{"@type":"NRID","@value":"9000254574786"},{"@type":"NRID","@value":"9000381070061"},{"@type":"NRID","@value":"9000347111729"},{"@type":"NRID","@value":"9000009478108"},{"@type":"NRID","@value":"9000409802893"},{"@type":"NRID","@value":"9000414533531"},{"@type":"NRID","@value":"9000018768195"},{"@type":"NRID","@value":"9000017274150"},{"@type":"NRID","@value":"9000254574779"},{"@type":"NRID","@value":"9000254572463"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/koji_inoue_aori"}],"foaf:name":[{"@value":"Koji Inoue"}],"jpcoar:affiliationName":[{"@value":"Department of Marine Bioscience, Atmosphere and Ocean Research Institute, The University of Tokyo , Kashiwa, Chiba, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416896","@type":"Researcher","foaf:name":[{"@value":"Morimi Teruya"}],"jpcoar:affiliationName":[{"@value":"Okinawa Industrial Technology Center , 12-2 Suzaki, Uruma, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416777","@type":"Researcher","foaf:name":[{"@value":"Kazuhito Satou"}],"jpcoar:affiliationName":[{"@value":"Okinawa Institute of Advanced Sciences (OIAS) , 5-1 Suzaki, Uruma, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416652","@type":"Researcher","foaf:name":[{"@value":"Kuniko Teruya"}],"jpcoar:affiliationName":[{"@value":"Okinawa Institute of Advanced Sciences (OIAS) , 5-1 Suzaki, Uruma, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416515","@type":"Researcher","foaf:name":[{"@value":"Makiko Shimoji"}],"jpcoar:affiliationName":[{"@value":"Okinawa Institute of Advanced Sciences (OIAS) , 5-1 Suzaki, Uruma, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416781","@type":"Researcher","foaf:name":[{"@value":"Hinako Tamotsu"}],"jpcoar:affiliationName":[{"@value":"Okinawa Institute of Advanced Sciences (OIAS) , 5-1 Suzaki, Uruma, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416778","@type":"Researcher","foaf:name":[{"@value":"Takashi Hirano"}],"jpcoar:affiliationName":[{"@value":"Okinawa Institute of Advanced Sciences (OIAS) , 5-1 Suzaki, Uruma, Okinawa, Japan"},{"@value":"Okinawa Science and Technology Promotion Center (OSTC) , 112-18 Asahimachi, Naha, Okinawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416657","@type":"Researcher","foaf:name":[{"@value":"Tadashi Maruyama"}],"jpcoar:affiliationName":[{"@value":"Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1380848658338416647","@type":"Researcher","foaf:name":[{"@value":"Takao Yoshida"}],"jpcoar:affiliationName":[{"@value":"Department of Marine Biodiversity Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) , 2-15 Natsushima-cho, Yokosuka, Kanagawa, Japan"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"17517362"},{"@type":"EISSN","@value":"17517370"}],"prism:publicationName":[{"@value":"The ISME Journal"}],"dc:publisher":[{"@value":"Oxford University Press (OUP)"}],"prism:publicationDate":"2015-09-29","prism:volume":"10","prism:number":"4","prism:startingPage":"990","prism:endingPage":"1001"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","dc:rights":["https://creativecommons.org/licenses/by-nc-nd/4.0/","https://creativecommons.org/licenses/by-nc-nd/4.0"],"url":[{"@id":"http://www.nature.com/articles/ismej2015176.pdf"},{"@id":"http://www.nature.com/articles/ismej2015176"},{"@id":"https://academic.oup.com/ismej/article-pdf/10/4/990/56171449/41396_2016_article_bfismej2015176.pdf"}],"createdAt":"2015-09-29","modifiedAt":"2024-02-14","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Gills","dc:title":"Gills"},{"@id":"https://cir.nii.ac.jp/all?q=Sequence%20Analysis,%20DNA","dc:title":"Sequence Analysis, DNA"},{"@id":"https://cir.nii.ac.jp/all?q=Polymerase%20Chain%20Reaction","dc:title":"Polymerase Chain Reaction"},{"@id":"https://cir.nii.ac.jp/all?q=Oxygen","dc:title":"Oxygen"},{"@id":"https://cir.nii.ac.jp/all?q=Genes,%20Bacterial","dc:title":"Genes, Bacterial"},{"@id":"https://cir.nii.ac.jp/all?q=Multigene%20Family","dc:title":"Multigene Family"},{"@id":"https://cir.nii.ac.jp/all?q=Animals","dc:title":"Animals"},{"@id":"https://cir.nii.ac.jp/all?q=Mytilidae","dc:title":"Mytilidae"},{"@id":"https://cir.nii.ac.jp/all?q=Original%20Article","dc:title":"Original Article"},{"@id":"https://cir.nii.ac.jp/all?q=Seawater","dc:title":"Seawater"},{"@id":"https://cir.nii.ac.jp/all?q=Symbiosis","dc:title":"Symbiosis"},{"@id":"https://cir.nii.ac.jp/all?q=Ecosystem","dc:title":"Ecosystem"},{"@id":"https://cir.nii.ac.jp/all?q=In%20Situ%20Hybridization","dc:title":"In Situ Hybridization"}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040000781858996224","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"15K14801"},{"@type":"JGN","@value":"JP15K14801"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-15K14801/"}],"notation":[{"@language":"ja","@value":"貝の引っ越し機能を利用する付着生物防除法開発"},{"@language":"en","@value":"Development of a method to prevent biofouling utilizing the translocation mechanisms of mussels"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360004231543749248","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Simultaneous analysis of free amino acids and taurine-related compounds in deep-sea mussel tissues using reversed-phase HPLC"}]},{"@id":"https://cir.nii.ac.jp/crid/1360005516872295936","@type":"Article","resourceType":"学術雑誌論文(journal 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Clonal thiotrophic symbiont populations occupy deep-sea mussel bacteriocytes with pathways connecting to the external environment"}]},{"@id":"https://cir.nii.ac.jp/crid/1360576138739126400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Contribution of Nitrate Respiration to the Energy Budget of the Symbiont-Containing Clam <i>Lucinoma Aequizonata</i>:A Calorimetric Study"}]},{"@id":"https://cir.nii.ac.jp/crid/1360580230596690432","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Heterologous expression and functional characterization of cysteamine dioxygenase from the deep-sea mussel Bathymodiolus septemdierum"}]},{"@id":"https://cir.nii.ac.jp/crid/1360848659515459584","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Ancient Occasional Host Switching of Maternally Transmitted Bacterial Symbionts of Chemosynthetic Vesicomyid Clams"}]},{"@id":"https://cir.nii.ac.jp/crid/1361412893226762496","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Dual energy metabolism of the\n                    <i>Campylobacterota</i>\n                    endosymbiont in the chemosynthetic snail\n                    <i>Alviniconcha marisindica</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994033929728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genomic variation landscape of the human gut microbiome"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994994070272","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Evidence for the role of endosymbionts in regional-scale habitat partitioning by hydrothermal vent symbioses"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699995603926912","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A dual symbiosis shared by two mussel species,\n                    <i>Bathymodiolus azoricus</i>\n                    and\n                    <i>Bathymodiolus puteoserpentis</i>\n                    (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid‐Atlantic Ridge"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699995614893312","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Off‐axis symbiosis found: characterization and biogeography of bacterial symbionts of\n                    <i>Bathymodiolus</i>\n                    mussels from Lost City hydrothermal vents"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981468914859136","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Symbiosis insights through metagenomic analysis of a microbial 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mussels"}]},{"@id":"https://cir.nii.ac.jp/crid/1362825895837191552","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Subtype Variation Among Bacterial Endosymbionts of Tubeworms (Annelida: Siboglinidae) from the Gulf of California"}]},{"@id":"https://cir.nii.ac.jp/crid/1362825896336633600","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel."}]},{"@id":"https://cir.nii.ac.jp/crid/1363107370989127552","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Nitrate reductases of Escherichia coli: Sequence of the second nitrate reductase and comparison with that encoded by the narGHJI operon"}]},{"@id":"https://cir.nii.ac.jp/crid/1363107371344762752","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Occurrence, Classification, and Biological Function of Hydrogenases:  An Overview"}]},{"@id":"https://cir.nii.ac.jp/crid/1363670320322519552","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Hydrogen is an energy source for hydrothermal vent symbioses"}]},{"@id":"https://cir.nii.ac.jp/crid/1363670320428762880","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The Co‐occurrence of Methanotrophic and Chemoautotrophic Sulfur‐Oxidizing Bacterial Symbionts in a Deep‐sea Mussel"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794007728768","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794460459008","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794736492032","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Environmental Acquisition of Thiotrophic Endosymbionts by Deep-Sea Mussels of the Genus\n            <i>Bathymodiolus</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794742407680","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild\n                    <i>Prochlorococcus</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233268187215232","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233268349874048","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts 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