{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1361412892008284416.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1016/j.meegid.2019.103959"}},{"identifier":{"@type":"URI","@value":"https://api.elsevier.com/content/article/PII:S1567134819301789?httpAccept=text/xml"}},{"identifier":{"@type":"URI","@value":"https://api.elsevier.com/content/article/PII:S1567134819301789?httpAccept=text/plain"}},{"identifier":{"@type":"PMID","@value":"31299324"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@value":"Complete genome sequencing and genetic characterization of porcine sapovirus genogroup (G) X and GXI: GVI, GVII, GX, and GXI sapoviruses share common genomic features and form a unique porcine SaV clade"}],"description":[{"notation":[{"@value":"Sapoviruses (SaVs) are enteric viruses belonging to the family Caliciviridae that infect humans and animals, including pigs. To date, SaVs have been classified into 19 genogroups (G) based on complete VP1 sequences; however, complete genome sequences of some SaV Gs are not yet available. In this study, we determined the full genome sequences of four SaVs (two GX and two GXI SaVs) and analyzed them together with those of other SaVs. The complete genome sequences of GX and GXI SaVs, excluding the poly(A) tails, were 7124, 7142, 7170, and 7179 nucleotides, which were shorter than those of other SaVs, except for porcine GVI and GVII viruses. Genetic characterization revealed that GX SaVs and GXI SaVs shared common features with GVI and GVII viruses, such as the first 10 amino acid residues in the ORF1 coding region, a shorter ORF1 than that of the other genogroups, and the predicted secondary structure of the 5' end of the genome and the starting region of non-structural protein/structural protein junction. Phylogenetic analyses showed that GX and GXI SaVs branched with porcine GVI, GVII, and GIX SaVs and formed a clade consisting of only porcine SaVs. These findings suggest that porcine GX and GXI SaVs together with porcine GVI, GVII, and possibly GIX SaVs, evolved from a common ancestor in the porcine population."}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1381412892008284421","@type":"Researcher","foaf:name":[{"@value":"Fujiko Sunaga"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284417","@type":"Researcher","foaf:name":[{"@value":"Tsuneyuki Masuda"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284418","@type":"Researcher","foaf:name":[{"@value":"Hiroshi Aoki"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284416","@type":"Researcher","foaf:name":[{"@value":"Mika Ito"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284426","@type":"Researcher","foaf:name":[{"@value":"Kaori Sano"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284422","@type":"Researcher","foaf:name":[{"@value":"Yuki Naoi"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284423","@type":"Researcher","foaf:name":[{"@value":"Yukie Katayama"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284428","@type":"Researcher","foaf:name":[{"@value":"Tsutomu Omatsu"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284424","@type":"Researcher","foaf:name":[{"@value":"Mami Oba"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284429","@type":"Researcher","foaf:name":[{"@value":"Tetsuya Furuya"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284425","@type":"Researcher","foaf:name":[{"@value":"Junsuke Shirai"}]},{"@id":"https://cir.nii.ac.jp/crid/1381412892008284427","@type":"Researcher","foaf:name":[{"@value":"Tetsuya Mizutani"}]},{"@id":"https://cir.nii.ac.jp/crid/1420282801187194880","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"50356242"},{"@type":"NRID","@value":"1000050356242"},{"@type":"NRID","@value":"9000017384071"},{"@type":"NRID","@value":"9000014281843"},{"@type":"NRID","@value":"9000000423736"},{"@type":"NRID","@value":"9000258586201"},{"@type":"NRID","@value":"9000019160221"},{"@type":"NRID","@value":"9000347162583"},{"@type":"NRID","@value":"9000025005345"},{"@type":"NRID","@value":"9000413893556"},{"@type":"NRID","@value":"9000238242510"},{"@type":"NRID","@value":"9000240112348"},{"@type":"NRID","@value":"9000009956529"},{"@type":"NRID","@value":"9000253082853"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/niid-oka"}],"foaf:name":[{"@value":"Tomoichiro Oka"}]},{"@id":"https://cir.nii.ac.jp/crid/1420001326228557312","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"10540669"},{"@type":"NRID","@value":"1000010540669"},{"@type":"NRID","@value":"9000006701289"},{"@type":"NRID","@value":"9000387430852"},{"@type":"NRID","@value":"9000398991351"},{"@type":"NRID","@value":"9000307258094"},{"@type":"NRID","@value":"9000318589892"},{"@type":"NRID","@value":"9000020925330"},{"@type":"NRID","@value":"9000347111998"},{"@type":"NRID","@value":"9000240042608"},{"@type":"NRID","@value":"9000391586375"},{"@type":"NRID","@value":"9000414558879"},{"@type":"NRID","@value":"9000412589058"},{"@type":"NRID","@value":"9000263061166"},{"@type":"NRID","@value":"9000376927437"},{"@type":"NRID","@value":"9000259832487"},{"@type":"NRID","@value":"9000415426980"},{"@type":"NRID","@value":"9000387471510"},{"@type":"NRID","@value":"9000356502006"},{"@type":"NRID","@value":"9000345378634"},{"@type":"NRID","@value":"9000327094048"},{"@type":"NRID","@value":"9000367875001"},{"@type":"NRID","@value":"9000019104533"},{"@type":"NRID","@value":"9000325830769"},{"@type":"NRID","@value":"9000254984464"},{"@type":"NRID","@value":"9000402590416"},{"@type":"NRID","@value":"9000383701860"},{"@type":"NRID","@value":"9000318581074"},{"@type":"NRID","@value":"9000314379572"},{"@type":"NRID","@value":"9000398645125"},{"@type":"NRID","@value":"9000240145794"},{"@type":"NRID","@value":"9000312720654"},{"@type":"NRID","@value":"9000404316964"},{"@type":"NRID","@value":"9000406324858"},{"@type":"NRID","@value":"9000317150455"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/azabu-u_m-nagai"}],"foaf:name":[{"@value":"Makoto Nagai"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"15671348"}],"prism:publicationName":[{"@value":"Infection, Genetics and Evolution"}],"dc:publisher":[{"@value":"Elsevier BV"}],"prism:publicationDate":"2019-11","prism:volume":"75","prism:startingPage":"103959"},"reviewed":"false","dc:rights":["https://www.elsevier.com/tdm/userlicense/1.0/","https://www.elsevier.com/legal/tdmrep-license"],"url":[{"@id":"https://api.elsevier.com/content/article/PII:S1567134819301789?httpAccept=text/xml"},{"@id":"https://api.elsevier.com/content/article/PII:S1567134819301789?httpAccept=text/plain"}],"createdAt":"2019-07-09","modifiedAt":"2025-10-27","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Base%20Sequence","dc:title":"Base Sequence"},{"@id":"https://cir.nii.ac.jp/all?q=Genotype","dc:title":"Genotype"},{"@id":"https://cir.nii.ac.jp/all?q=Swine","dc:title":"Swine"},{"@id":"https://cir.nii.ac.jp/all?q=Genome,%20Viral","dc:title":"Genome, Viral"},{"@id":"https://cir.nii.ac.jp/all?q=Sapovirus","dc:title":"Sapovirus"},{"@id":"https://cir.nii.ac.jp/all?q=Feces","dc:title":"Feces"},{"@id":"https://cir.nii.ac.jp/all?q=Animals","dc:title":"Animals"},{"@id":"https://cir.nii.ac.jp/all?q=Nucleic%20Acid%20Conformation","dc:title":"Nucleic Acid Conformation"},{"@id":"https://cir.nii.ac.jp/all?q=RNA,%20Viral","dc:title":"RNA, Viral"},{"@id":"https://cir.nii.ac.jp/all?q=Phylogeny","dc:title":"Phylogeny"}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040000781999418112","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"18K05977"},{"@type":"JGN","@value":"JP18K05977"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-18K05977/"}],"notation":[{"@language":"ja","@value":"メタゲノム解析による種間伝播（スピルオーバー）する動物ウイルスの探索"},{"@language":"en","@value":"Study for interspecies transmission of animal viruses using metagenomics approach"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360004232367571200","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity and intergenogroup recombination events of sapoviruses detected from feces of pigs in Japan"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011142938843776","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011145299256576","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity of porcine sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011145701237248","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Full genome analysis of bovine astrovirus from fecal samples of cattle in Japan: identification of possible interspecies transmission of bovine astrovirus"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292618572766848","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Seroprevalence and molecular detection of porcine sapovirus in symptomatic suckling piglets in Guangdong Province, China"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292620751915264","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Detection and Molecular Characterization of Porcine Enteric Calicivirus in Korea, Genetically Related to Sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1360565169425483008","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic Characterization and Classification of Human and Animal Sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574094287122048","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity of porcine enteric caliciviruses in pigs raised in Rio de Janeiro State, Brazil"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574096011075072","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP"}]},{"@id":"https://cir.nii.ac.jp/crid/1360848656374138496","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"First complete genome sequences of genogroup V, genotype 3 porcine sapoviruses: common 5′-terminal genomic feature of sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855568739374848","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855569109547264","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Comprehensive Review of Human Sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044151513728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Detection and characterization of porcine caliciviruses in Italy"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044219337984","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Metagenomic identification, genetic characterization and genotyping of porcine sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137044714386304","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Incidence, Diversity, and Molecular Epidemiology of Sapoviruses in Swine across Europe"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137045947487744","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137046159603584","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518814733440","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Bile acids are essential for porcine enteric calicivirus replication in association with down-regulation of signal transducer and activator of transcription 1"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418520733515392","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Mfold web server for nucleic acid folding and hybridization prediction"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699995405030912","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Prevalence of Porcine Noroviruses, Molecular Characterization of Emerging Porcine Sapoviruses from Finisher Swine in the United States, and Unified Classification Scheme for Sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262943745212672","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Molecular detection of porcine enteric caliciviruses in Venezuelan farms"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262944793055744","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Viral metagenomics analysis demonstrates the diversity of viral flora in piglet diarrhoeic faeces in China"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262945237711488","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262945264513152","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Prevalence of Noroviruses and Sapoviruses in Swine of Various Ages Determined by Reverse Transcription-PCR and Microwell Hybridization Assays"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262946089557248","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Porcine noroviruses and sapoviruses on Korean swine farms"}]},{"@id":"https://cir.nii.ac.jp/crid/1362544418551704448","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Age distribution of porcine sapovirus asymptomatic infection and molecular evidence of genogroups GIII and GIX? circulation in distinct Brazilian pig production systems"}]},{"@id":"https://cir.nii.ac.jp/crid/1362544421109485696","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Detection of Zoonotic Pathogens and Characterization of Novel Viruses Carried by Commensal Rattus norvegicus in New York City"}]},{"@id":"https://cir.nii.ac.jp/crid/1362825894215488000","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The First Chinese Porcine Sapovirus Strain That Contributed to an Outbreak of Gastroenteritis in Piglets"}]},{"@id":"https://cir.nii.ac.jp/crid/1362825894792217600","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity of human sapovirus across the Americas"}]},{"@id":"https://cir.nii.ac.jp/crid/1363107370554836736","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity among sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1363388844043621760","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Functions of the 5′ and 3′ ends of calicivirus genomes"}]},{"@id":"https://cir.nii.ac.jp/crid/1363388845900844800","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets"}]},{"@id":"https://cir.nii.ac.jp/crid/1363670318654192384","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Caliciviridae Other Than Noroviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951793575294976","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The RNA Helicase eIF4A Is Required for Sapovirus Translation"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794532119808","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"RT-PCR test for detecting porcine sapovirus in weanling piglets in Hunan Province, China"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951795757867520","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Noroviruses and sapoviruses in pigs in Belgium"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951795876124672","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Detection and molecular characterisation of noroviruses and sapoviruses in asymptomatic swine and cattle in Slovenian farms"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233269679312896","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Zoonotic aspects of infections with noroviruses and sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1371414295282276492","@type":"Product","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic diversity of porcine sapoviruses in pigs from the Amazon region of Brazil"}]},{"@id":"https://cir.nii.ac.jp/crid/1371414295282276493","@type":"Product","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon"}]},{"@id":"https://cir.nii.ac.jp/crid/1371414295282276610","@type":"Product","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Near-complete human sapovirus genome sequences from Kenya"}]},{"@id":"https://cir.nii.ac.jp/crid/1371414295282276738","@type":"Product","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"First complete genome sequences of Genogroup VI porcine Sapoviruses"}]},{"@id":"https://cir.nii.ac.jp/crid/1371414295282276740","@type":"Product","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Molecular detection of enteric viruses and the genetic characterization of porcine astroviruses and sapoviruses in domestic pigs from Slovakian farms. BMC"}]}],"dataSourceIdentifier":[{"@type":"CROSSREF","@value":"10.1016/j.meegid.2019.103959"},{"@type":"KAKEN","@value":"PRODUCT-22678310"},{"@type":"OPENAIRE","@value":"doi_dedup___::2029730b62063c8be90db44fb6f0c7a0"}]}