{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1361981469011765632.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1093/gbe/evs110"}},{"identifier":{"@type":"URI","@value":"http://academic.oup.com/gbe/article-pdf/4/12/1316/17916971/evs110.pdf"}},{"identifier":{"@type":"PMID","@value":"23204304"}}],"dc:title":[{"@value":"Mutational Dynamics of Aroid Chloroplast Genomes"}],"description":[{"notation":[{"@value":"A characteristic feature of eukaryote and prokaryote genomes is the co-occurrence of nucleotide substitution and insertion/deletion (indel) mutations. Although similar observations have also been made for chloroplast DNA, genome-wide associations have not been reported. We determined the chloroplast genome sequences for two morphotypes of taro (Colocasia esculenta; family Araceae) and compared these with four publicly available aroid chloroplast genomes. Here, we report the extent of genome-wide association between direct and inverted repeats, indels, and substitutions in these aroid chloroplast genomes. We suggest that alternative but not mutually exclusive hypotheses explain the mutational dynamics of chloroplast genome evolution."}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1381981469011765633","@type":"Researcher","foaf:name":[{"@value":"Ibrar Ahmed"}]},{"@id":"https://cir.nii.ac.jp/crid/1381981469011765504","@type":"Researcher","foaf:name":[{"@value":"Patrick J. Biggs"}]},{"@id":"https://cir.nii.ac.jp/crid/1381981469011765505","@type":"Researcher","foaf:name":[{"@value":"Peter J. Matthews"}]},{"@id":"https://cir.nii.ac.jp/crid/1381981469011765632","@type":"Researcher","foaf:name":[{"@value":"Lesley J. Collins"}]},{"@id":"https://cir.nii.ac.jp/crid/1381981469011765634","@type":"Researcher","foaf:name":[{"@value":"Michael D. Hendy"}]},{"@id":"https://cir.nii.ac.jp/crid/1381981469011765635","@type":"Researcher","foaf:name":[{"@value":"Peter J. Lockhart"}]}],"publication":{"publicationIdentifier":[{"@type":"EISSN","@value":"17596653"}],"prism:publicationName":[{"@value":"Genome Biology and Evolution"}],"dc:publisher":[{"@value":"Oxford University Press (OUP)"}],"prism:publicationDate":"2012-11-29","prism:volume":"4","prism:number":"12","prism:startingPage":"1316","prism:endingPage":"1323"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","url":[{"@id":"http://academic.oup.com/gbe/article-pdf/4/12/1316/17916971/evs110.pdf"}],"createdAt":"2012-12-01","modifiedAt":"2024-05-02","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Letter","dc:title":"Letter"},{"@id":"https://cir.nii.ac.jp/all?q=Inverted%20Repeat%20Sequences","dc:title":"Inverted Repeat Sequences"},{"@id":"https://cir.nii.ac.jp/all?q=INDEL%20Mutation","dc:title":"INDEL Mutation"},{"@id":"https://cir.nii.ac.jp/all?q=Mutation%20Rate","dc:title":"Mutation Rate"},{"@id":"https://cir.nii.ac.jp/all?q=Araceae","dc:title":"Araceae"},{"@id":"https://cir.nii.ac.jp/all?q=Point%20Mutation","dc:title":"Point Mutation"},{"@id":"https://cir.nii.ac.jp/all?q=Databases,%20Nucleic%20Acid","dc:title":"Databases, Nucleic Acid"},{"@id":"https://cir.nii.ac.jp/all?q=Genome,%20Chloroplast","dc:title":"Genome, Chloroplast"},{"@id":"https://cir.nii.ac.jp/all?q=Phylogeny","dc:title":"Phylogeny"},{"@id":"https://cir.nii.ac.jp/all?q=Genome-Wide%20Association%20Study","dc:title":"Genome-Wide Association Study"},{"@id":"https://cir.nii.ac.jp/all?q=Repetitive%20Sequences,%20Nucleic%20Acid","dc:title":"Repetitive Sequences, Nucleic Acid"}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360004235461479808","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Identification of chloroplast genome loci suitable for high‐resolution phylogeographic studies of <i><scp>C</scp>olocasia esculenta</i> (<scp>L</scp>.) <scp>S</scp>chott (<scp>A</scp>raceae) and closely related taxa"}]},{"@id":"https://cir.nii.ac.jp/crid/1360290617733866752","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Chloroplast genome evolution in the Dracunculus clade (Aroideae, Araceae)"}]},{"@id":"https://cir.nii.ac.jp/crid/1360572092707838976","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Evolutionary origins of taro (<i>Colocasia esculenta</i>) in Southeast Asia"}]}],"dataSourceIdentifier":[{"@type":"CROSSREF","@value":"10.1093/gbe/evs110"},{"@type":"OPENAIRE","@value":"doi_dedup___::f9fb4c9882d3edf659ccad5ca7d5c2b2"},{"@type":"CROSSREF","@value":"10.1111/1755-0998.12128_references_DOI_Ityj8jxPdJzbs5ZRvGfFAa9Xki6"},{"@type":"CROSSREF","@value":"10.1016/j.ygeno.2020.12.016_references_DOI_Ityj8jxPdJzbs5ZRvGfFAa9Xki6"},{"@type":"CROSSREF","@value":"10.1002/ece3.6958_references_DOI_Ityj8jxPdJzbs5ZRvGfFAa9Xki6"}]}