{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1364233269099435264.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.3390/cells8010010"}},{"identifier":{"@type":"URI","@value":"https://www.mdpi.com/2073-4409/8/1/10/pdf"}}],"dc:title":[{"@value":"SpermQ–A Simple Analysis Software to Comprehensively Study Flagellar Beating and Sperm Steering"}],"description":[{"type":"abstract","notation":[{"@value":"<jats:p>Motile cilia, also called flagella, are found across a broad range of species; some cilia propel prokaryotes and eukaryotic cells like sperm, while cilia on epithelial surfaces create complex fluid patterns e.g., in the brain or lung. For sperm, the picture has emerged that the flagellum is not only a motor but also a sensor that detects stimuli from the environment, computing the beat pattern according to the sensory input. Thereby, the flagellum navigates sperm through the complex environment in the female genital tract. However, we know very little about how environmental signals change the flagellar beat and, thereby, the swimming behavior of sperm. It has been proposed that distinct signaling domains in the flagellum control the flagellar beat. However, a detailed analysis has been mainly hampered by the fact that current comprehensive analysis approaches rely on complex microscopy and analysis systems. Thus, knowledge on sperm signaling regulating the flagellar beat is based on custom quantification approaches that are limited to only a few aspects of the beat pattern, do not resolve the kinetics of the entire flagellum, rely on manual, qualitative descriptions, and are only a little comparable among each other. Here, we present SpermQ, a ready-to-use and comprehensive analysis software to quantify sperm motility. SpermQ provides a detailed quantification of the flagellar beat based on common time-lapse images acquired by dark-field or epi-fluorescence microscopy, making SpermQ widely applicable. We envision SpermQ becoming a standard tool in flagellar and motile cilia research that allows to readily link studies on individual signaling components in sperm and distinct flagellar beat patterns.</jats:p>"}]}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1384233269099435266","@type":"Researcher","foaf:name":[{"@value":"Jan Hansen"}],"jpcoar:affiliationName":[{"@value":"Institute of Innate Immunity, Biophysical Imaging, University Hospital Bonn, University of Bonn, 53127 Bonn, Germany"}]},{"@id":"https://cir.nii.ac.jp/crid/1384233269099435264","@type":"Researcher","foaf:name":[{"@value":"Sebastian Rassmann"}],"jpcoar:affiliationName":[{"@value":"Institute of Innate Immunity, Biophysical Imaging, University Hospital Bonn, University of Bonn, 53127 Bonn, Germany"}]},{"@id":"https://cir.nii.ac.jp/crid/1384233269099435265","@type":"Researcher","foaf:name":[{"@value":"Jan Jikeli"}],"jpcoar:affiliationName":[{"@value":"Institute of Innate Immunity, Biophysical Imaging, University Hospital Bonn, University of Bonn, 53127 Bonn, Germany"}]},{"@id":"https://cir.nii.ac.jp/crid/1384233269099435267","@type":"Researcher","foaf:name":[{"@value":"Dagmar Wachten"}],"jpcoar:affiliationName":[{"@value":"Institute of Innate Immunity, Biophysical Imaging, University Hospital Bonn, University of Bonn, 53127 Bonn, Germany"},{"@value":"Center of Advanced European Studies and Research (CAESAR), Molecular Physiology, 53175 Bonn, Germany"}]}],"publication":{"publicationIdentifier":[{"@type":"EISSN","@value":"20734409"}],"prism:publicationName":[{"@value":"Cells"}],"dc:publisher":[{"@value":"MDPI AG"}],"prism:publicationDate":"2018-12-26","prism:volume":"8","prism:number":"1","prism:startingPage":"10"},"reviewed":"false","dc:rights":["https://creativecommons.org/licenses/by/4.0/"],"url":[{"@id":"https://www.mdpi.com/2073-4409/8/1/10/pdf"}],"createdAt":"2018-12-26","modifiedAt":"2025-10-11","relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1050566774961145472","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Computer-assisted beat-pattern analysis and the flagellar waveforms of bovine spermatozoa"}]},{"@id":"https://cir.nii.ac.jp/crid/1360009142756055936","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Cfap97d1 is important for flagellar axoneme maintenance and male mouse fertility"}]},{"@id":"https://cir.nii.ac.jp/crid/1360013168769443200","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["isReferencedBy"],"jpcoar:relatedTitle":[{"@value":"Modelling Motility: The Mathematics of Spermatozoa"}]}],"dataSourceIdentifier":[{"@type":"CROSSREF","@value":"10.3390/cells8010010"},{"@type":"CROSSREF","@value":"10.1371/journal.pgen.1008954_references_DOI_15oRTcsIHSVaA5vXeZaZqKtiq7q"},{"@type":"CROSSREF","@value":"10.3389/fcell.2021.710825_references_DOI_15oRTcsIHSVaA5vXeZaZqKtiq7q"},{"@type":"CROSSREF","@value":"10.1098/rsos.200769_references_DOI_15oRTcsIHSVaA5vXeZaZqKtiq7q"}]}