{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1390001204723463552.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1270/jsbbs.66.175"}},{"identifier":{"@type":"NDL_BIB_ID","@value":"027188528"}},{"identifier":{"@type":"URI","@value":"http://id.ndl.go.jp/bib/027188528"}},{"identifier":{"@type":"URI","@value":"https://ndlsearch.ndl.go.jp/books/R000000004-I027188528"}},{"identifier":{"@type":"URI","@value":"https://www.jstage.jst.go.jp/article/jsbbs/66/2/66_175/_pdf"}},{"identifier":{"@type":"NAID","@value":"130005144060"}}],"dc:title":[{"@language":"en","@value":"Development of IP and SCAR markers linked to the yellow seed color gene in <i>Brassica juncea</i> L."},{"@value":"Development of IP and SCAR markers linked to the yellow seed color gene in Brassica juncea L"}],"dc:language":"en","description":[{"type":"abstract","notation":[{"@language":"en","@value":"Previous studies showed that the yellow seed color gene of a yellow mustard was located on the A09 chromosome. In this study, the sequences of the molecular markers linked to the yellow seed color gene were analyzed, the gene was primarily mapped to an interval of 23.304 to 29.402M. Twenty genes and eight markers’ sequences in this region were selected to design the IP and SCAR primers. These primers were used to screen a BC<sub>8</sub>S<sub>1</sub> population consisting of 1256 individuals. As a result, five IP and five SCAR markers were successfully developed. IP4 and Y1 were located on either side of the yellow seed color gene at a distance of 0.1 and 0.3 cM, respectively. IP1, IP2 and IP3 derived from <i>Bra036827</i>, <i>Bra036828</i>, <i>Bra036829</i> separately, co-segregated with the target gene. BLAST analysis indicated that the sequences of newly developed markers showed good collinearity with those of the A09 chromosome, and that the target gene might exist between 27.079 and 27.616M. In light of annotations of the genes in this region, only <i>Bra036828</i> is associated with flavonoid biosynthesis. This gene has high similarity with the <i>TRANSPARENT TESTA6</i> gene, <i>Bra036828</i> was hence identified as being the gene possibly responsible for yellow seed color, in our research."}],"abstractLicenseFlag":"disallow"}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1410001204723463557","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050708"}],"foaf:name":[{"@language":"en","@value":"Huang Zhen"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463553","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050709"}],"foaf:name":[{"@language":"en","@value":"Liu Lu"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463555","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050710"}],"foaf:name":[{"@language":"en","@value":"Lu Hong"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463554","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050711"}],"foaf:name":[{"@language":"en","@value":"Lang Lina"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463558","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050712"}],"foaf:name":[{"@language":"en","@value":"Zhao Na"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463556","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050713"}],"foaf:name":[{"@language":"en","@value":"Ding Juan"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001204723463552","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000319050714"}],"foaf:name":[{"@language":"en","@value":"Xu Aixia"}],"jpcoar:affiliationName":[{"@language":"en","@value":"State Key Laboratory of Crop Stress Biology for Arid Areas/College of Agronomy, Northwest A&F University"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"13447610"},{"@type":"LISSN","@value":"13447610"},{"@type":"EISSN","@value":"13473735"},{"@type":"NDL_BIB_ID","@value":"000000159884"},{"@type":"ISSN","@value":"13447610"},{"@type":"NCID","@value":"AA11317194"}],"prism:publicationName":[{"@language":"en","@value":"Breeding Science"},{"@language":"ja","@value":"Ｂｒｅｅｄｉｎｇ　Ｓｃｉｅｎｃｅ"},{"@language":"en","@value":"Breed. Sci."},{"@language":"ja","@value":"Ｂｒｅｅｄ．　Ｓｃｉ．"}],"dc:publisher":[{"@language":"en","@value":"Japanese Society of Breeding"},{"@language":"ja","@value":"日本育種学会"}],"prism:publicationDate":"2016","prism:volume":"66","prism:number":"2","prism:startingPage":"175","prism:endingPage":"180"},"reviewed":"false","url":[{"@id":"http://id.ndl.go.jp/bib/027188528"},{"@id":"https://ndlsearch.ndl.go.jp/books/R000000004-I027188528"},{"@id":"https://www.jstage.jst.go.jp/article/jsbbs/66/2/66_175/_pdf"}],"availableAt":"2016","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=%3Ci%3EBrassica%20juncea%3C/i%3E","dc:title":"<i>Brassica juncea</i>"},{"@id":"https://cir.nii.ac.jp/all?q=yellow%20seed%20color%20gene","dc:title":"yellow seed color gene"},{"@id":"https://cir.nii.ac.jp/all?q=fine%20mapping","dc:title":"fine mapping"},{"@id":"https://cir.nii.ac.jp/all?q=IP%20and%20SCAR","dc:title":"IP and SCAR"}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360002216806696960","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The genome of the mesopolyploid crop species Brassica rapa"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011145790046080","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Transferability and genome specificity of a new set of microsatellite primers among <i>Brassica</i> species of the U triangle"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011146488101248","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fine mapping of the yellow seed locus in <i>Brassica juncea</i> L."}]},{"@id":"https://cir.nii.ac.jp/crid/1360292621133749120","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Flavonoid diversity and biosynthesis in seed of Arabidopsis thaliana"}]},{"@id":"https://cir.nii.ac.jp/crid/1360564064127374720","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The <i>TRANSPARENT TESTA12</i> Gene of Arabidopsis Encodes a Multidrug Secondary Transporter-like Protein Required for Flavonoid Sequestration in Vacuoles of the Seed Coat Endothelium"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574092887791616","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574094751193088","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"AFLP: a new technique for DNA fingerprinting"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855568637687936","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Segmental Structure of the <i>Brassica napus</i> Genome Based on Comparative Analysis With <i>Arabidopsis thaliana</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855570565740800","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Inheritance of seed colour and identification of RAPD and AFLP markers linked to the seed colour gene in rapeseed (Brassica napus L.)"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518842172160","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Towards map-based cloning: fine mapping of a recessive genic male-sterile gene (BnMs2) in Brassica napus L. and syntenic region identification based on the Arabidopsis thaliana genome sequences"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518986858880","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Development of Strains with Yellow Seedcoat in Indian Mustard (<i>Brassies juncea</i> Czern. & Coss.)"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519307362048","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Mapping of BnMs4 and BnRf to a common microsyntenic region of Arabidopsis thaliana chromosome 3 using intron polymorphism markers"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418520230211584","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"THE ESTIMATION OF MAP DISTANCES FROM RECOMBINATION VALUES"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981468738559104","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa"}]},{"@id":"https://cir.nii.ac.jp/crid/1361981471440543488","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262945540196864","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Mapping and tagging of seed coat colour and the identification of microsatellite markers for marker-assisted manipulation of the trait in Brassica juncea"}]},{"@id":"https://cir.nii.ac.jp/crid/1362544418997166592","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genetic characterization and fine mapping of a yellow-seeded gene in Dahuang (a Brassica rapa landrace)"}]},{"@id":"https://cir.nii.ac.jp/crid/1362544420943846144","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fine mapping of the recessive genic male-sterile gene (Bnms1) in Brassica napus L."}]},{"@id":"https://cir.nii.ac.jp/crid/1362825893930861568","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa"}]},{"@id":"https://cir.nii.ac.jp/crid/1363388845609680768","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Integration of<i>Brassica</i>A genome genetic linkage map between<i>Brassica napus</i>and<i>B. rapa</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1363670318468159232","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Gene Silencing of BnTT10 Family Genes Causes Retarded Pigmentation and Lignin Reduction in the Seed Coat of Brassica napus"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951795476276864","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in <i>Brassica napus</i> using a genome-walking technique"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233269666490880","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Development of SRAP, SNP and Multiplexed SCAR molecular markers for the major seed coat color gene in Brassica rapa L."}]}],"dataSourceIdentifier":[{"@type":"JALC","@value":"oai:japanlinkcenter.org:2000952306"},{"@type":"NDL_SEARCH","@value":"oai:ndlsearch.ndl.go.jp:R000000004-I027188528"},{"@type":"CROSSREF","@value":"10.1270/jsbbs.66.175"},{"@type":"CIA","@value":"130005144060"}]}