{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1390282680449921152.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1266/ggs.83.403"}},{"identifier":{"@type":"NDL_BIB_ID","@value":"9758652"}},{"identifier":{"@type":"URI","@value":"http://id.ndl.go.jp/bib/9758652"}},{"identifier":{"@type":"URI","@value":"https://ndlsearch.ndl.go.jp/books/R000000004-I9758652"}},{"identifier":{"@type":"URI","@value":"http://www.jstage.jst.go.jp/article/ggs/83/5/83_5_403/_pdf"}},{"identifier":{"@type":"PMID","@value":"19168991"}},{"identifier":{"@type":"NAID","@value":"10023887978"}}],"dc:title":[{"@language":"en","@value":"DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species"}],"dc:language":"en","description":[{"type":"abstract","notation":[{"@language":"en","@value":"The level and pattern of nucleotide variation in the <i>SUPERWOMAN1(SPW1)</i> locus of the wild rice <i>Oriza rufipogon</i> and its related species were analyzed. <i>SPW1</i> is orthologous to <i>APETELA3</i>(<i>AP3</i>) in <i>Arabidopsis thaliana</i>. The estimated level of nucleotide variation for the entire region (π = 0.0046) was intermediate among those for other genes of <i>O. rufipogon</i>, although the estimates varied considerably among the SPW1 domains. Complicated haplotype structure was detected, resulting in a high proportion of significant linkage disequilibrium. Deviation from the neutrality was not detected. However, purifying selection was suggested by lack of replacement variation in the MADS-box and I-domain regions, which function as DNA-binding domain. On the other hand, an excess of drastic amino acid changes was detected in the C-domain, as in the <i>AP3</i> region of <i>A. thaliana</i>. Taken together, these results imply that different types of natural selection are acting among different domains of a single protein. In the phylogenetic tree, <i>O. sativa</i> strains were included in the same cluster of <i>O. rufipogon</i>, supporting the hypothesis that <i>O. rufipogon</i> is the wild ancestor of <i>O. sativa</i>.<br>"}],"abstractLicenseFlag":"disallow"}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1410282680449921281","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000014135767"}],"foaf:name":[{"@language":"en","@value":"Teranishi Chika"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Laboratory of Plant Genetics, Graduate School of Agriculture, Kyoto University"}]},{"@id":"https://cir.nii.ac.jp/crid/1420001326231886976","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"40570750"},{"@type":"NRID","@value":"1000040570750"},{"@type":"ORCID","@value":"0000-0002-3614-1759"},{"@type":"NRID","@value":"9000386095290"},{"@type":"NRID","@value":"9000010291335"},{"@type":"NRID","@value":"9000006329227"},{"@type":"NRID","@value":"9000401831046"},{"@type":"NRID","@value":"9000006684040"},{"@type":"NRID","@value":"9000018396108"},{"@type":"NRID","@value":"9000327929619"},{"@type":"NRID","@value":"9000290824065"},{"@type":"NRID","@value":"9000007051695"},{"@type":"NRID","@value":"9000411246738"},{"@type":"NRID","@value":"9000401833382"},{"@type":"NRID","@value":"9000398646896"},{"@type":"NRID","@value":"9000261040026"},{"@type":"NRID","@value":"9000237781677"},{"@type":"NRID","@value":"9000399539358"},{"@type":"NRID","@value":"9000254125490"},{"@type":"NRID","@value":"9000021458869"},{"@type":"NRID","@value":"9000399010389"},{"@type":"NRID","@value":"9000409498336"},{"@type":"NRID","@value":"9000014264039"},{"@type":"NRID","@value":"9000254549386"},{"@type":"NRID","@value":"9000408808335"},{"@type":"NRID","@value":"9000398155808"},{"@type":"NRID","@value":"9000016605066"},{"@type":"NRID","@value":"9000003212581"},{"@type":"NRID","@value":"9000327929610"},{"@type":"NRID","@value":"9000409498318"},{"@type":"NRID","@value":"9000412613743"},{"@type":"NRID","@value":"9000398260599"},{"@type":"NRID","@value":"9000014135769"},{"@type":"NRID","@value":"9000003272915"},{"@type":"NRID","@value":"9000345253208"},{"@type":"NRID","@value":"9000021667826"},{"@type":"NRID","@value":"9000405633720"},{"@type":"NRID","@value":"9000380123419"},{"@type":"NRID","@value":"9000390880496"},{"@type":"NRID","@value":"9000325828741"},{"@type":"NRID","@value":"9000254411304"},{"@type":"NRID","@value":"9000021618363"},{"@type":"NRID","@value":"9000351085147"},{"@type":"NRID","@value":"9000019238572"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/pmievol"}],"foaf:name":[{"@language":"en","@value":"Yoshida Kentaro"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Laboratory of Plant Genetics, Graduate School of Agriculture, Kyoto University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410001205472571136","@type":"Researcher","personIdentifier":[{"@type":"NRID","@value":"9000000105726"}],"foaf:name":[{"@language":"en","@value":"Miyashita Naohiko T."}],"jpcoar:affiliationName":[{"@language":"en","@value":"Laboratory of Plant Genetics, Graduate School of Agriculture, Kyoto University"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"13417568"},{"@type":"LISSN","@value":"13417568"},{"@type":"EISSN","@value":"18805779"},{"@type":"NDL_BIB_ID","@value":"000000156883"},{"@type":"ISSN","@value":"13417568"},{"@type":"NCID","@value":"AA11077421"}],"prism:publicationName":[{"@language":"en","@value":"Genes & Genetic Systems"},{"@language":"en","@value":"Genes Genet. Syst."}],"dc:publisher":[{"@language":"en","@value":"The Genetics Society of Japan"},{"@language":"ja","@value":"日本遺伝学会"}],"prism:publicationDate":"2008","prism:volume":"83","prism:number":"5","prism:startingPage":"403","prism:endingPage":"415"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","url":[{"@id":"http://id.ndl.go.jp/bib/9758652"},{"@id":"https://ndlsearch.ndl.go.jp/books/R000000004-I9758652"},{"@id":"http://www.jstage.jst.go.jp/article/ggs/83/5/83_5_403/_pdf"}],"availableAt":"2008","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=DNA%20polymorphism","dc:title":"DNA polymorphism"},{"@id":"https://cir.nii.ac.jp/all?q=%3Ci%3ESPW1%3C/i%3E","dc:title":"<i>SPW1</i>"},{"@id":"https://cir.nii.ac.jp/all?q=wild%20rice","dc:title":"wild rice"}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360011144468699776","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"AGL1-AGL6, an Arabidopsis gene family with 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testing the neutral mutation hypothesis by DNA polymorphism."}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794804550400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Functional divergence within the\n                    <i>APETALA3/PISTILLATA</i>\n                    floral  homeotic gene lineages"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951796093866496","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"On the number of segregating sites in genetical models without recombination"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233269254096384","@type":"Article","relationType":["references","cites"],"jpcoar:relatedTitle":[{"@value":"Identification of class B and class C floral organ identity genes from rice plants"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001205443469056","@type":"Article","relationType":["references","cites"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Origin of the genic diversity of cultivated 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Several species complexes"}]},{"@id":"https://cir.nii.ac.jp/crid/1571417126449740032","@type":"Article","relationType":["cites"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon"}]},{"@id":"https://cir.nii.ac.jp/crid/1571417126643606656","@type":"Article","relationType":["cites"]},{"@id":"https://cir.nii.ac.jp/crid/1571417126688753792","@type":"Article","relationType":["cites"],"jpcoar:relatedTitle":[{"@language":"en","@value":"The ABCs of floral evolution"}]},{"@id":"https://cir.nii.ac.jp/crid/1571698601425411456","@type":"Article","relationType":["cites"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon"}]},{"@id":"https://cir.nii.ac.jp/crid/1571698601426151040","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["cites"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Large scale DNA polymorphism 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