{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1390583093132044416.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.1270/jsbbs.23067"}},{"identifier":{"@type":"NDL_BIB_ID","@value":"033745851"}},{"identifier":{"@type":"URI","@value":"http://id.ndl.go.jp/bib/033745851"}},{"identifier":{"@type":"URI","@value":"https://ndlsearch.ndl.go.jp/books/R000000004-I033745851"}},{"identifier":{"@type":"URI","@value":"https://www.jstage.jst.go.jp/article/jsbbs/74/4/74_23067/_pdf"}}],"dc:title":[{"@language":"en","@value":"Resistance haplotypes to green rice leafhopper (<i>Nephotettix cincticeps</i> Uhler) estimated in genome-wide association study in Myanmar <i>indica</i> rice landraces"},{"@value":"Resistance haplotypes to green rice leafhopper (Nephotettix cincticeps Uhler) estimated in genome-wide association study in Myanmar indica rice landraces"}],"dc:language":"en","description":[{"type":"abstract","notation":[{"@language":"en","@value":"<p>Green rice leafhopper (GRH, <i>Nephotettix cincticeps</i> Uhler) is a serious insect pest of rice in the temperate regions of Asia. Myanmar has a high genetic diversity and is located at the center of the origin of rice. To understand the genetic architecture of GRH resistance in Myanmar <i>indica</i> rice landraces, a genome-wide association study (GWAS) was performed using a diversity panel collected from diverse geographical regions. Phenotypic variation in GRH resistance was associated with three genomic regions, MTA4, MTA5, and MTA11, located on chromosomes 4, 5, and 11, respectively. MTA4 and MTA5 were adjacent to the known resistance genes <i>GRH6</i> and <i>GRH1</i>. Analysis of haplotypes and linkage disequilibrium blocks revealed that the haplotypes Hap<i>GRH6</i>A, Hap<i>GRH1</i>A, and HapMTA11A mainly explained GRH resistance. Map-based cloning revealed that <i>GRH6</i> was highly induced by GRH infestation and conferred resistance by inhibiting the sucking of phloem sap. The distribution of resistance haplotypes revealed that accessions harboring major resistance haplotypes (Hap<i>GRH6</i>A and Hap<i>GRH1</i>A) were mainly distributed in Southern Myanmar, and HapMTA11A was mainly responsible for GRH resistance in mountainous areas of Myanmar. Our findings could facilitate the elucidation of the molecular mechanism of GRH resistance and provide essential haplotype-based genetic information for the development of GRH-resistant rice cultivars.</p>"}],"abstractLicenseFlag":"disallow"}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1410583093132044418","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Kham Nang Moe"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Plant Breeding Laboratory, Faculty of Agriculture, Kyushu University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044417","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Kanamori Hiroyuki"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Institute of Crop Science, National Agriculture and Food Research Organization"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044292","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Wu Jianzhong"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Institute of Crop Science, National Agriculture and Food Research Organization"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044288","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Matsumoto Takashi"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Department of Bioscience, Faculty of Life Sciences, Tokyo University of Agriculture"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044416","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Fujita Daisuke"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Faculty of Agriculture, Saga University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044290","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Yasui Hideshi"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Plant Breeding Laboratory, Faculty of Agriculture, Kyushu University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044291","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Yoshimura Atsushi"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Plant Breeding Laboratory, Faculty of Agriculture, Kyushu University"}]},{"@id":"https://cir.nii.ac.jp/crid/1410583093132044289","@type":"Researcher","foaf:name":[{"@language":"en","@value":"Yamagata Yoshiyuki"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Plant Breeding Laboratory, Faculty of Agriculture, Kyushu University"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"13447610"},{"@type":"LISSN","@value":"13447610"},{"@type":"EISSN","@value":"13473735"},{"@type":"NDL_BIB_ID","@value":"000000159884"},{"@type":"ISSN","@value":"13447610"},{"@type":"NCID","@value":"AA11317194"}],"prism:publicationName":[{"@language":"en","@value":"Breeding Science"},{"@language":"ja","@value":"Ｂｒｅｅｄｉｎｇ　Ｓｃｉｅｎｃｅ"},{"@language":"en","@value":"Breed. Sci."},{"@language":"ja","@value":"Ｂｒｅｅｄ．　Ｓｃｉ．"}],"dc:publisher":[{"@language":"en","@value":"Japanese Society of Breeding"},{"@language":"ja","@value":"日本育種学会"}],"prism:publicationDate":"2024","prism:volume":"74","prism:number":"4","prism:startingPage":"366","prism:endingPage":"381"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","url":[{"@id":"http://id.ndl.go.jp/bib/033745851"},{"@id":"https://ndlsearch.ndl.go.jp/books/R000000004-I033745851"},{"@id":"https://www.jstage.jst.go.jp/article/jsbbs/74/4/74_23067/_pdf"}],"availableAt":"2024","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=rice","dc:title":"rice"},{"@id":"https://cir.nii.ac.jp/all?q=green%20rice%20leafhopper","dc:title":"green rice leafhopper"},{"@id":"https://cir.nii.ac.jp/all?q=resistance","dc:title":"resistance"},{"@id":"https://cir.nii.ac.jp/all?q=haplotype","dc:title":"haplotype"},{"@id":"https://cir.nii.ac.jp/all?q=marker-trait%20association","dc:title":"marker-trait association"}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1360011143924670720","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A genome-wide association study of a global rice panel reveals resistance in<i>Oryza sativa</i>to root-knot nematodes"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011144316487680","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Plant NBS-LRR proteins: adaptable guards"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011144940123520","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Development and characterization of japonica rice lines carrying the brown planthopper-resistance genes BPH12 and BPH6"}]},{"@id":"https://cir.nii.ac.jp/crid/1360016870094281728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Bph30 confers resistance to brown planthopper by fortifying sclerenchyma in rice leaf 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rice"}]},{"@id":"https://cir.nii.ac.jp/crid/1360864737803598592","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values"}]},{"@id":"https://cir.nii.ac.jp/crid/1360864737803606400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.)"}]},{"@id":"https://cir.nii.ac.jp/crid/1360864737803727360","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Widespread false gene gains caused by duplication errors in genome assemblies"}]},{"@id":"https://cir.nii.ac.jp/crid/1360864737803870848","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"GWAS analysis to elucidate genetic composition underlying a photoperiod-insensitive rice 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rrBLUP"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951793729562624","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Development of cleaved amplified polymorphic sequence (CAPS) markers linked to a green rice leafhopper resistance gene, <i>Grh3(t)</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794024828928","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794191913216","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Map-based Cloning and Characterization of a Brown Planthopper Resistance Gene BPH26 from Oryza sativa L. ssp. indica Cultivar ADR52"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233269379428608","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Rapid and efficientAgrobacterium-mediated transformation in rice"}]},{"@id":"https://cir.nii.ac.jp/crid/1364233270664661120","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fine mapping of Grh1, a major gene associated with antibiosis to green rice leafhopper in rice"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001204722286208","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001204722803072","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"A major QTL for resistance to green rice leafhopper (Nephotettix cincticeps Uhler) derived from African rice (Oryza glaberrima Steud.)"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001277350214400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"High-resolution mapping of <i>GRH6</i>, a gene from <i>Oryza nivara</i> (Sharma et Shastry) conferring resistance to green rice leafhopper (<i>Nephotettix cincticeps</i> Uhler)"},{"@value":"High-resolution mapping of GRH6, a gene from Oryza nivara (Sharma et Shastry) conferring resistance to green rice leafhopper (Nephotettix cincticeps Uhler)"}]},{"@id":"https://cir.nii.ac.jp/crid/1390282679304736640","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Ti-Plasmid Vectors Useful for Functional Analysis of Rice Genes."},{"@value":"Ti-plasmid vectors useful for function analysis of rice genes"}]},{"@id":"https://cir.nii.ac.jp/crid/1390282679695333248","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Genetic Analysis of Resistance to Green Rice Leafhopper (Nephotettix cincticeps UHLER) in Rice Parental Line, Norin - PL6, using RFLP Markers."},{"@language":"ja","@value":"RFLPマーカーを用いた水稲中間母本農6号におけるツマグロヨコバイ耐虫性の遺伝子分析"},{"@value":"Genetic analysis of resistance to green rice leafhopper(Nephotettix cincticeps UHLER)in rice parental line,Norin-PL6,using RFLP marker"},{"@language":"ja-Kana","@value":"Genetic analysis of resistance to green"}]},{"@id":"https://cir.nii.ac.jp/crid/1390282679698876416","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Mapping of a Major Resistance Gene to the Brown Planthopper in the Rice Cultivar Rathu Heenati"}]},{"@id":"https://cir.nii.ac.jp/crid/1390282679698896896","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Mapping of the Grh 1 Locus for Green Rice Leafhopper Resistance in Rice Using RFLP Markers."}]},{"@id":"https://cir.nii.ac.jp/crid/1390282679698992512","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Genetic basis of multiple resistance to the brown planthopper (<i>Nilaparvata lugens</i> Stål) and the green rice leafhopper (<i>Nephotettix cincticeps</i> Uhler) in the rice cultivar ‘ASD7’ (<i>Oryza sativa</i> L. ssp. <i>indica</i>)"},{"@value":"Genetic basis of multiple resistance to the brown planthopper (Nilaparvata lugens Stal) and the green rice leafhopper (Nephotettix cincticeps Uhler) in the rice cultivar 'ASD7' (Oryza sativa L. ssp. indica)"}]},{"@id":"https://cir.nii.ac.jp/crid/1390282681221180032","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Artificial selection of biotypes of green rice leafhopper, Nephotettix cincticeps Uhler (Homoptera: Cidadellidae), and virulence to resistant rice varieties"}]},{"@id":"https://cir.nii.ac.jp/crid/1390863241230442496","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Development of genomic and genetic resources facilitating molecular genetic studies on untapped Myanmar rice germplasms"}]}],"dataSourceIdentifier":[{"@type":"JALC","@value":"oai:japanlinkcenter.org:2013375506"},{"@type":"NDL_SEARCH","@value":"oai:ndlsearch.ndl.go.jp:R000000004-I033745851"},{"@type":"CROSSREF","@value":"10.1270/jsbbs.23067"},{"@type":"OPENAIRE","@value":"doi_________::d7a09e7d6a422ff5c743d21efedf648e"}]}