{"@context":{"@vocab":"https://cir.nii.ac.jp/schema/1.0/","rdfs":"http://www.w3.org/2000/01/rdf-schema#","dc":"http://purl.org/dc/elements/1.1/","dcterms":"http://purl.org/dc/terms/","foaf":"http://xmlns.com/foaf/0.1/","prism":"http://prismstandard.org/namespaces/basic/2.0/","cinii":"http://ci.nii.ac.jp/ns/1.0/","datacite":"https://schema.datacite.org/meta/kernel-4/","ndl":"http://ndl.go.jp/dcndl/terms/","jpcoar":"https://github.com/JPCOAR/schema/blob/master/2.0/"},"@id":"https://cir.nii.ac.jp/crid/1390867886012634496.json","@type":"Article","productIdentifier":[{"identifier":{"@type":"DOI","@value":"10.4325/seikeikakou.37.294"}},{"identifier":{"@type":"HDL","@value":"https://hdl.handle.net/2324/7344039"}},{"identifier":{"@type":"NDL_BIB_ID","@value":"034232308"}},{"identifier":{"@type":"URI","@value":"http://id.ndl.go.jp/bib/034232308"}},{"identifier":{"@type":"URI","@value":"https://ndlsearch.ndl.go.jp/books/R000000004-I034232308"}},{"identifier":{"@type":"URI","@value":"https://www.jstage.jst.go.jp/article/seikeikakou/37/7/37_294/_pdf"}}],"resourceType":"学術雑誌論文(journal article)","dc:title":[{"@language":"en","@value":"Brownian Motion and Microrheology in Complex Fluids under Periodic Boundary Conditions"}],"dc:language":"en","description":[{"type":"abstract","notation":[{"@language":"en","@value":"<p>We review the theoretical aspects of determining linear rheology using passive microrheology from simulations under periodic boundary conditions (PBCs). It is common to impose periodic boundary conditions when evaluating bulk properties by molecular simulation. The Brownian motion of the probe particles is affected by PBCs, and thus their effects must be considered when microrheological analysis is applied to evaluate the dynamic modulus. First, we outline the theory of microrheology based on the generalized Langevin equation (GLE) in an unbounded domain. Then, we briefly discuss the effect of PBCs on the diffusion coefficient. After that, we explain the effect of PBCs on the mean-square displacement of Brownian particles and their impact on microrheology. The passive microrheology technique under PBCs provides a new approach for rheology evaluation in molecular simulations of complex liquids in addition to the traditional Green-Kubo formula and non-equilibrium molecular dynamics (NEMD).</p>"}],"abstractLicenseFlag":"disallow"}],"creator":[{"@id":"https://cir.nii.ac.jp/crid/1420564276159587200","@type":"Researcher","personIdentifier":[{"@type":"KAKEN_RESEARCHERS","@value":"10422982"},{"@type":"NRID","@value":"1000010422982"},{"@type":"ORCID","@value":"0000-0002-2034-2855"},{"@type":"NRID","@value":"9000364895110"},{"@type":"NRID","@value":"9000283865066"},{"@type":"NRID","@value":"9000258440848"},{"@type":"NRID","@value":"9000003207995"},{"@type":"NRID","@value":"9000345321499"},{"@type":"NRID","@value":"9000258667222"},{"@type":"NRID","@value":"9000258672763"},{"@type":"NRID","@value":"9000277501252"},{"@type":"NRID","@value":"9000346926425"},{"@type":"NRID","@value":"9000257993454"},{"@type":"NRID","@value":"9000283784589"},{"@type":"NRID","@value":"9000283854486"},{"@type":"NRID","@value":"9000254255469"},{"@type":"NRID","@value":"9000402789286"},{"@type":"NRID","@value":"9000410900960"},{"@type":"NRID","@value":"9000258672031"},{"@type":"NRID","@value":"9000258675940"},{"@type":"NRID","@value":"9000335562544"},{"@type":"NRID","@value":"9000253665589"},{"@type":"NRID","@value":"9000283244934"},{"@type":"NRID","@value":"9000015295226"},{"@type":"NRID","@value":"9000322093664"},{"@type":"NRID","@value":"9000344808492"},{"@type":"NRID","@value":"9000283852448"},{"@type":"NRID","@value":"9000283859134"},{"@type":"NRID","@value":"9000283861669"},{"@type":"NRID","@value":"9000401947895"},{"@type":"NRID","@value":"9000409987485"},{"@type":"NRID","@value":"9000257774527"},{"@type":"NRID","@value":"9000401951151"},{"@type":"NRID","@value":"9000403596034"},{"@type":"NRID","@value":"9000347172199"},{"@type":"NRID","@value":"9000254255454"},{"@type":"NRID","@value":"9000283558038"},{"@type":"NRID","@value":"9000010670815"},{"@type":"NRID","@value":"9000364776571"},{"@type":"NRID","@value":"9000022112856"},{"@type":"NRID","@value":"9000258682128"},{"@type":"NRID","@value":"9000244015820"},{"@type":"NRID","@value":"9000283859112"},{"@type":"NRID","@value":"9000254732077"},{"@type":"NRID","@value":"9000401902397"},{"@type":"NRID","@value":"9000401902734"},{"@type":"NRID","@value":"9000411274287"},{"@type":"NRID","@value":"9000258672034"},{"@type":"NRID","@value":"9000258672074"},{"@type":"NRID","@value":"9000242142081"},{"@type":"NRID","@value":"9000025003445"},{"@type":"NRID","@value":"9000258672794"},{"@type":"NRID","@value":"9000258440844"},{"@type":"NRID","@value":"9000258442373"},{"@type":"NRID","@value":"9000242843134"},{"@type":"NRID","@value":"9000283864959"},{"@type":"NRID","@value":"9000346928569"},{"@type":"NRID","@value":"9000392021410"},{"@type":"NRID","@value":"9000242114485"},{"@type":"NRID","@value":"9000243905385"},{"@type":"RESEARCHMAP","@value":"https://researchmap.jp/read0118866"}],"foaf:name":[{"@language":"en","@value":"Nakayama Yasuya"}],"jpcoar:affiliationName":[{"@language":"en","@value":"Department of Chemical Engineering, Kyushu University"}]}],"publication":{"publicationIdentifier":[{"@type":"PISSN","@value":"09154027"},{"@type":"LISSN","@value":"09154027"},{"@type":"EISSN","@value":"18837417"},{"@type":"NDL_BIB_ID","@value":"000000069302"},{"@type":"ISSN","@value":"09154027"},{"@type":"NCID","@value":"AN10278882"}],"prism:publicationName":[{"@language":"en","@value":"Seikei-Kakou"},{"@language":"ja","@value":"成形加工"},{"@language":"en","@value":"Seikei-Kakou"},{"@language":"en","@value":"Journal of The Japan Society of Polymer Processing"},{"@language":"en","@value":"Seikei kako"},{"@language":"ja","@value":"成形加工"}],"dc:publisher":[{"@language":"en","@value":"The Japan Society of Polymer Processing"},{"@language":"ja","@value":"一般社団法人 プラスチック成形加工学会"}],"prism:publicationDate":"2025-06-20","prism:volume":"37","prism:number":"7","prism:startingPage":"294","prism:endingPage":"301"},"reviewed":"false","dcterms:accessRights":"http://purl.org/coar/access_right/c_abf2","url":[{"@id":"http://id.ndl.go.jp/bib/034232308"},{"@id":"https://ndlsearch.ndl.go.jp/books/R000000004-I034232308"},{"@id":"https://www.jstage.jst.go.jp/article/seikeikakou/37/7/37_294/_pdf"}],"availableAt":"2025-06-20","foaf:topic":[{"@id":"https://cir.nii.ac.jp/all?q=Microrheology","dc:title":"Microrheology"},{"@id":"https://cir.nii.ac.jp/all?q=viscoelastic","dc:title":"viscoelastic"},{"@id":"https://cir.nii.ac.jp/all?q=Brownian%20motion","dc:title":"Brownian motion"},{"@id":"https://cir.nii.ac.jp/all?q=periodic%20boundary%20conditions","dc:title":"periodic boundary conditions"}],"dcterms:subject":[{"subjectScheme":"Other","notation":[{"@language":"en","@value":"Microrheology"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"viscoelastic"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"Brownian motion"}]},{"subjectScheme":"Other","notation":[{"@language":"en","@value":"periodic boundary conditions"}]}],"project":[{"@id":"https://cir.nii.ac.jp/crid/1040858752025019648","@type":"Project","projectIdentifier":[{"@type":"KAKEN","@value":"23K03343"},{"@type":"JGN","@value":"JP23K03343"},{"@type":"URI","@value":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-23K03343/"}],"notation":[{"@language":"ja","@value":"複雑流体中で相互作用する粒子分散系の非平衡メソ構造形成とマクロレオロジー"},{"@language":"en","@value":"Structure and rheology of complex particle suspensions"}]}],"relatedProduct":[{"@id":"https://cir.nii.ac.jp/crid/1050018672316786048","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Simulating Brownian motion in thermally fluctuating viscoelastic fluids by using the smoothed profile method"}]},{"@id":"https://cir.nii.ac.jp/crid/1050282676666980480","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Simulation method to resolve hydrodynamic interactions in colloidal dispersions"},{"@value":"Simulation method to resolve hydrodynamic interactions in colloidal dispersion"}]},{"@id":"https://cir.nii.ac.jp/crid/1050291768243157760","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Microrheological Approach for Probing the Entanglement Properties of Polyelectrolyte Solutions"}]},{"@id":"https://cir.nii.ac.jp/crid/1050293788308461056","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Smoothed profile method for direct numerical simulations of hydrodynamically interacting particles"}]},{"@id":"https://cir.nii.ac.jp/crid/1360002218566230400","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Simulating (electro)hydrodynamic effects in colloidal dispersions: Smoothed profile method"}]},{"@id":"https://cir.nii.ac.jp/crid/1360011144331268864","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"System-Size Dependence of Diffusion Coefficients and Viscosities from Molecular Dynamics Simulations with Periodic Boundary Conditions"}]},{"@id":"https://cir.nii.ac.jp/crid/1360023716990422912","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A SPH-based particle model for computational microrheology"}]},{"@id":"https://cir.nii.ac.jp/crid/1360023717717516288","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Statistical Mechanics of Nonequilbrium Liquids"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292619461859200","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"A generalization of Faxén's theorem to nonsteady motion of a sphere through an incompressible fluid in arbitrary flow"}]},{"@id":"https://cir.nii.ac.jp/crid/1360292621083785728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Slow flow through a periodic array of spheres"}]},{"@id":"https://cir.nii.ac.jp/crid/1360298341823060608","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Treating inertia in passive microbead rheology"}]},{"@id":"https://cir.nii.ac.jp/crid/1360298760704301824","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Probing linear and nonlinear microrheology of viscoelastic fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1360302869438350464","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Inertial Effects in the Response of Viscous and Viscoelastic Fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1360305192147923200","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fluctuation theory of single-file diffusion"}]},{"@id":"https://cir.nii.ac.jp/crid/1360305193557791616","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"The analytic solution of Stokes for time-dependent creeping flow around a sphere: Application to linear viscoelasticity as an ingredient for the generalized Stokes–Einstein relation and microrheology analysis"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574094290689280","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Self-Diffusion Coefficient of the Hard-Sphere Fluid:  System Size Dependence and Empirical Correlations"}]},{"@id":"https://cir.nii.ac.jp/crid/1360574094618623872","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Brownian particles in shear flow and harmonic potentials: A study of long-time tails"}]},{"@id":"https://cir.nii.ac.jp/crid/1360586670964702464","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Microrheology analysis in molecular dynamics simulations: Finite box size correction"}]},{"@id":"https://cir.nii.ac.jp/crid/1360586671526115840","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Materials Science of Polymers for Engineers"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855570026070784","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Stokes flow through periodic arrays of spheres"}]},{"@id":"https://cir.nii.ac.jp/crid/1360855570280850816","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"On the periodic fundamental solutions of the Stokes equations and their application to viscous flow past a cubic array of spheres"}]},{"@id":"https://cir.nii.ac.jp/crid/1360868145563607424","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"On the correspondence between creeping flows of viscous and viscoelastic fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1361137045751083136","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Molecular dynamics simulation of a polymer chain in solution"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518750036224","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Computer Simulation of Liquids"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418518884014464","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Determination of viscoelastic properties by analysis of probe-particle motion in molecular simulations"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519136806656","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Linear and Nonlinear Viscoelasticity of a Model Unentangled Polymer Melt: Molecular Dynamics and Rouse Modes Analysis"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519147622272","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Velocity Fluctuations of a Hard-Core Brownian Particle"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519516369536","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fluid Mechanics of Microrheology"}]},{"@id":"https://cir.nii.ac.jp/crid/1361418519884781184","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"THE FUNDAMENTAL PRINCIPLES OF STATISTICAL PHYSICS"}]},{"@id":"https://cir.nii.ac.jp/crid/1361699994274166400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Brownian motion in a Maxwell fluid"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262943774822784","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Rheology and dynamics of particles in viscoelastic media"}]},{"@id":"https://cir.nii.ac.jp/crid/1362262944973624704","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"System size dependence of the transport coefficients and Stokes–Einstein relationship of hard sphere and Weeks–Chandler–Andersen fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1362544418640406400","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Particle Tracking Microrheology of Complex Fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1363107368421307008","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"LXXV. <i>A dynamical theory of diffusion for non-electrolytes and the molecular mass of albumin</i>"}]},{"@id":"https://cir.nii.ac.jp/crid/1363388844062596352","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Optical Measurements of Frequency-Dependent Linear Viscoelastic Moduli of Complex Fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1363388844461147520","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Application of the Langevin equation to fluid suspensions"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951793901641728","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Advances in the microrheology of complex fluids"}]},{"@id":"https://cir.nii.ac.jp/crid/1363951794577625088","@type":"Article","relationType":["references"],"jpcoar:relatedTitle":[{"@value":"Fluctuating hydrodynamics and Brownian motion"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001204196418944","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"Microrheology of Soft Matter"}]},{"@id":"https://cir.nii.ac.jp/crid/1390001204197741952","@type":"Article","resourceType":"学術雑誌論文(journal article)","relationType":["references"],"jpcoar:relatedTitle":[{"@language":"en","@value":"A Numerical Model for Brownian Particles Fluctuating in Incompressible Fluids"}]}],"dataSourceIdentifier":[{"@type":"JALC","@value":"oai:japanlinkcenter.org:2014476397"},{"@type":"IRDB","@value":"oai:irdb.nii.ac.jp:01211:0006716826"},{"@type":"NDL_SEARCH","@value":"oai:ndlsearch.ndl.go.jp:R000000004-I034232308"},{"@type":"CROSSREF","@value":"10.4325/seikeikakou.37.294"}]}