[Updated on July 12] Integration of CiNii Articles into CiNii Research from April 1, 2022

Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries

  • Takashi Matsumoto
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Tsuyoshi Tanaka
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Hiroaki Sakai
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Naoki Amano
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Hiroyuki Kanamori
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Kanako Kurita
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Ari Kikuta
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Kozue Kamiya
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Mayu Yamamoto
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Hiroshi Ikawa
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Nobuyuki Fujii
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Kiyosumi Hori
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Takeshi Itoh
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S
  • Kazuhiro Sato
    National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (T.M., T.T., H.S., N.A., K.H., T.I.); Institute of Society for Techno-Innovation of Agriculture, Forestry, and Fisheries, Tsukuba, Ibaraki 305–0854, Japan (H.K., K.Ku., A.K., K.Ka., M.Y., H.I.); Hitachi Government and Public Corporation System Engineering, Ltd., Koto, Tokyo 135–8633, Japan (N.F.); Institute of Plant S

Abstract

<jats:title>Abstract</jats:title> <jats:p>Full-length cDNA (FLcDNA) libraries consisting of 172,000 clones were constructed from a two-row malting barley cultivar (Hordeum vulgare ‘Haruna Nijo’) under normal and stressed conditions. After sequencing the clones from both ends and clustering the sequences, a total of 24,783 complete sequences were produced. By removing duplicates between these and publicly available sequences, 22,651 representative sequences were obtained: 17,773 were novel barley FLcDNAs, and 1,699 were barley specific. Highly conserved genes were found in the barley FLcDNA sequences for 721 of 881 rice (Oryza sativa) trait genes with 50% or greater identity. These FLcDNA resources from our Haruna Nijo cDNA libraries and the full-length sequences of representative clones will improve our understanding of the biological functions of genes in barley, which is the cereal crop with the fourth highest production in the world, and will provide a powerful tool for annotating the barley genome sequences that will become available in the near future.</jats:p>

Journal

  • Plant Physiology

    Plant Physiology 156 (1), 20-28, 2011-03-17

    Oxford University Press (OUP)

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