Structural and Dynamic Alteration of Glycated Human Serum Albumin in Schiff Base and Amadori Adducts: A Molecular Simulation Study
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- Sittiwanichai, Sirin
- Faculty of Science, Department of Chemistry, Kasetsart University
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- Japrung, Deanpen
- National Nanotechnology Center, National Science and Technology Development Agency
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- Mori, Toshifumi
- Institute for Materials Chemistry and Engineering, Kyushu University Interdisciplinary Graduate School of Engineering Sciences, Kyushu University
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- Pongprayoon, Prapasiri
- Faculty of Science, Department of Chemistry, Kasetsart University Center for Advanced Studies in Nanotechnology for Chemical, Food and Agricultural Industries, KU Institute for Advanced Studies, Kasetsart University
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Description
Human serum albumin (HSA) is a protein carrier in blood transporting metabolites and drugs. Glycated HSA (GHSA) acts as a potential biomarker for diabetes. Thus, many attempts have been made to detect GHSA. Glycation was reported to damage the structure and ligand binding capability, where no molecular detail is available. Recently, the crystal structure of GHSA has been solved, where two glucose isomers (pyranose/ GLC and open-chain/GLO) are located at Sudlow’s site I. GLO was found to covalently bind to K_195, while GLC is trapped by noncontact interactions. GHSA exists in two forms (Schiff base (SCH) and Amadori (AMA) adducts), but how both disrupt albumin activity microscopically remains unknown. To this end, molecular dynamics simulations were performed here to explore the nature of SCH and AMA. Both forms are found to alter the main protein dynamics, resulting in (i) the widening of Sudlow’s site I entrance, (ii) the size reduction of nine fatty acid-binding pockets, (iii) the enlargement of Sudlow’s site I and the shrinking of Sudlow’s site II, (iv) the enhancement of C_34 reactivity, and (v) the change in the W_214 microenvironment. These unique characteristics found here can be useful for understanding the effect of glycation on the albumin function in more detail and designing specific and selective GHSA detection strategies.
Journal
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- Journal of Physical Chemistry B
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Journal of Physical Chemistry B 127 (23), 5230-5240, 2023-06-02
American Chemical Society
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Details 詳細情報について
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- CRID
- 1050018971027969792
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- NII Book ID
- AA11114073
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- ISSN
- 15205207
- 15206106
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- HANDLE
- 2324/7159643
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- PubMed
- 37267456
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- Text Lang
- en
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- Article Type
- journal article
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- Data Source
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- IRDB
- Crossref
- KAKEN
- OpenAIRE