Single-Nucleotide Polymorphism for Differentiating between the Rice Cultivars of Fukuoka Prefecture and Major Cultivars of Japan.

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  • 福岡県の水稲奨励品種および全国の主要品種を識別するための一塩基多型(SNP)情報
  • フクオカケン ノ スイトウ ショウレイ ヒンシュ オヨビ ゼンコク ノ シュヨウ ヒンシュ オ シキベツ スル タメ ノ ヒトシオキ タケイ(SNP)ジョウホウ

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Abstract

This study was performed to detect single-nucleotide polymorphisms (SNPs) among the cultivars of Fukuoka prefecture and major cultivars of Japan in order to establish a new cultivar differentiation system for rice. According to the published patent information, we tested 16 SNPs of which 15 were polymorphic among 107 rice cultivars. Furthermore, we showed that 101 of these 107 cultivars could be distinguished mutually by using these 15 SNPs. The number of alleles in all the SNP loci was 2 and not more than 3. We also detected 20 new SNPs among the 10 SNPs in the region flanking the original SNP loci.

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