BioJS: an open source JavaScript framework for biological data visualization

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  • John Gómez
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Leyla J. García
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Gustavo A. Salazar
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Jose Villaveces
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Swanand Gore
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Alexander García
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Maria J. Martín
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Guillaume Launay
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Rafael Alcántara
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Noemi del-Toro
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Marine Dumousseau
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Sandra Orchard
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Sameer Velankar
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Henning Hermjakob
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Chenggong Zong
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Peipei Ping
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Manuel Corpas
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK
  • Rafael C. Jiménez
    1 European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7925, South Africa, 3Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany, 4Institute for Digital Information and Scientific Communication, Florida State University, Tallahassee, FL, 32306-2100, USA, 5Institut de Biologie et Chimie des Protéines, UMR 5086 CNRS-Université Lyon 1, IFR 128 Biosciences Gerland-Lyon Sud, 7 passage du Vercors 69367, Lyon Cedex 07, France, 6Cardiovascular Research Laboratory, Division of Cardiology, Departments of Physiology and Medicine, UCLA David Geffen School of Medicine, Los Angeles, CA, 90095-1760, USA and 7The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, UK

書誌事項

公開日
2013-02-23
DOI
  • 10.1093/bioinformatics/btt100
公開者
Oxford University Press (OUP)

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説明

<jats:title>Abstract</jats:title> <jats:p>Summary: BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community.</jats:p> <jats:p>Availability and implementation:  http://code.google.com/p/biojs/.</jats:p> <jats:p>Contact:  rafael@ebi.ac.uk</jats:p> <jats:p>Supplementary information:  Supplementary data are available at Bioinformatics online.</jats:p>

収録刊行物

  • Bioinformatics

    Bioinformatics 29 (8), 1103-1104, 2013-02-23

    Oxford University Press (OUP)

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