Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

  • Guangyi Fan
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Yue Song
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Liandong Yang
    Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences , No. 7 Donghu South Road, Wuchang District, Wuhan, Hubei Province,
  • Xiaoyun Huang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Suyu Zhang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Mengqi Zhang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Xianwei Yang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Yue Chang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • He Zhang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Yongxin Li
    Center for Ecological and Environmental Sciences, Northwestern Polytechnical University , 1 Dongxiang Road, Chang'an District, Xi'an Shaanxi,710129,
  • Shanshan Liu
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Lili Yu
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Jeffery Chu
    Frasergen, Donghu High-Tech Development Zone , Donghu High-Tech Development Zone, Wuhan, Hubei Province,
  • Inge Seim
    Integrative Biology Laboratory, College of Life Sciences, Nanjing Normal University , No.1 Wenyuan Road Qixia District, Nanjing, 210023,
  • Chenguang Feng
    Center for Ecological and Environmental Sciences, Northwestern Polytechnical University , 1 Dongxiang Road, Chang'an District, Xi'an Shaanxi,710129,
  • Thomas J Near
    Department of Ecology & Evolutionary Biology, Yale University , New Haven, CT 06511,
  • Rod A Wing
    Biological and Environmental Sciences & Engineering Division, King Abdullah University of Science and Technology , Thuwal 23955-6900, Kingdom of
  • Wen Wang
    Center for Ecological and Environmental Sciences, Northwestern Polytechnical University , 1 Dongxiang Road, Chang'an District, Xi'an Shaanxi,710129,
  • Kun Wang
    Center for Ecological and Environmental Sciences, Northwestern Polytechnical University , 1 Dongxiang Road, Chang'an District, Xi'an Shaanxi,710129,
  • Jing Wang
    Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences , 7 Nanhai Road, Qingdao, Shandong 266071,
  • Xun Xu
    BGI-Shenzhen , Building 11, Beishan Industrial Zone, Yantian District, Shenzhen, 518083,
  • Huanming Yang
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Xin Liu
    BGI-Qingdao , 2 Hengyunshan Road, West Coast New Area, 266426, Qingdao,
  • Nansheng Chen
    Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences , 7 Nanhai Road, Qingdao, Shandong 266071,
  • Shunping He
    Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences , No. 7 Donghu South Road, Wuchang District, Wuhan, Hubei Province,

説明

<jats:title>Abstract</jats:title> <jats:sec> <jats:title>Background</jats:title> <jats:p>With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish.</jats:p> </jats:sec> <jats:sec> <jats:title>Results</jats:title> <jats:p>Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies.</jats:p> </jats:sec> <jats:sec> <jats:title>Conclusions</jats:title> <jats:p>To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.</jats:p> </jats:sec>

収録刊行物

  • GigaScience

    GigaScience 9 (8), giaa080-, 2020-08-01

    Oxford University Press (OUP)

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