<jats:title>Abstract</jats:title><jats:p>Well‐developed tors and associated boulder fields are present in exposed granitoid pluton, but their geomorphological origins have not been fully addressed. Although the tor‐like features are commonly attributed to the orthogonal joint system along which weathering proceeds and the weathering materials are removed, the majority of previous studies lack three‐dimensional (3‐D) morphological observations. One of the well‐known granitoid rock towers in Japan, namely, the obelisk at Mt. Jizogadake in the Japanese Southern Alps, was investigated using unmanned air vehicles (UAVs). A 3‐D observation of the granitoid obelisk found that it is shaped by columnar joints with an undulation along a long axis and irregularly shaped cross‐sections. Because of these features and intersection angles between the rock columns and exposure surfaces, the obelisk exhibits a peculiar morphology appearing as a heap of rock blocks when observed from the ground. The columnar jointing might have occurred in a marginal zone of the granitoid pluton due to faster cooling rates. The 3‐D observations also confirmed the columnar joints formation was predated by high‐angle, planar joints. The columnar joints divide the rock mass between those planar joints. This may imply that the high‐angle joints would have formed probably during cooling under the presence of tectonic and thermal stresses.</jats:p>