<scp>RCSB</scp> Protein Data Bank: Celebrating 50 years of the <scp>PDB</scp> with new tools for understanding and visualizing biological macromolecules in <scp>3D</scp>

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  • Stephen K. Burley
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Charmi Bhikadiya
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Chunxiao Bi
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Sebastian Bittrich
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Li Chen
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Gregg V. Crichlow
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Jose M. Duarte
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Shuchismita Dutta
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Maryam Fayazi
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Zukang Feng
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Justin W. Flatt
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Sai J. Ganesan
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, Quantitative Biosciences Institute University of California San Francisco California USA
  • David S. Goodsell
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Sutapa Ghosh
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Rachel Kramer Green
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Vladimir Guranovic
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Jeremy Henry
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Brian P. Hudson
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Catherine L. Lawson
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Yuhe Liang
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Robert Lowe
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Ezra Peisach
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Irina Persikova
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Dennis W. Piehl
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Yana Rose
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Andrej Sali
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, Quantitative Biosciences Institute University of California San Francisco California USA
  • Joan Segura
    Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center University of California La Jolla California USA
  • Monica Sekharan
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Chenghua Shao
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Brinda Vallat
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Maria Voigt
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • John D. Westbrook
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Shamara Whetstone
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Jasmine Y. Young
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA
  • Christine Zardecki
    Research Collaboratory for Structural Bioinformatics Protein Data Bank Rutgers, The State University of New Jersey Piscataway New Jersey USA

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<jats:title>Abstract</jats:title><jats:p>The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the US National Science Foundation, National Institutes of Health, and Department of Energy, has served structural biologists and Protein Data Bank (PDB) data consumers worldwide since 1999. RCSB PDB, a founding member of the Worldwide Protein Data Bank (wwPDB) partnership, is the US data center for the global PDB archive housing biomolecular structure data. RCSB PDB is also responsible for the security of PDB data, as the wwPDB‐designated Archive Keeper. Annually, RCSB PDB serves tens of thousands of three‐dimensional (3D) macromolecular structure data depositors (using macromolecular crystallography, nuclear magnetic resonance spectroscopy, electron microscopy, and micro‐electron diffraction) from all inhabited continents. RCSB PDB makes PDB data available from its research‐focused <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://rcsb.org">RCSB.org</jats:ext-link> web portal at no charge and without usage restrictions to millions of PDB data consumers working in every nation and territory worldwide. In addition, RCSB PDB operates an outreach and education <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://pdb101.rcsb.org">PDB101.RCSB.org</jats:ext-link> web portal that was used by more than 800,000 educators, students, and members of the public during calendar year 2020. This invited Tools Issue contribution describes (i) how the archive is growing and evolving as new experimental methods generate ever larger and more complex biomolecular structures; (ii) the importance of data standards and data remediation in effective management of the archive and facile integration with more than 50 external data resources; and (iii) new tools and features for 3D structure analysis and visualization made available during the past year <jats:italic>via</jats:italic> the <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://rcsb.org">RCSB.org</jats:ext-link> web portal.</jats:p>

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