Draft genome of the peanut A-genome progenitor (<i>Arachis duranensis</i>) provides insights into geocarpy, oil biosynthesis, and allergens
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- Xiaoping Chen
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Hongjie Li
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Manish K. Pandey
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Qingli Yang
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Xiyin Wang
- Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30605;
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- Vanika Garg
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Haifen Li
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Xiaoyuan Chi
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Dadakhalandar Doddamani
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Yanbin Hong
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Hari Upadhyaya
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Hui Guo
- Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30605;
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- Aamir W. Khan
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Fanghe Zhu
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Xiaoyan Zhang
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Lijuan Pan
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Gary J. Pierce
- Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30605;
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- Guiyuan Zhou
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Katta A. V. S. Krishnamohan
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Mingna Chen
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Ni Zhong
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Gaurav Agarwal
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Shuanzhu Li
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Annapurna Chitikineni
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Guo-Qiang Zhang
- Shenzhen Key Laboratory for Orchid Conservation and Utilization, National Orchid Conservation Center of China and Orchid Conservation and Research Center of Shenzhen, Shenzhen 518000, China;
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- Shivali Sharma
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Na Chen
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Haiyan Liu
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Pasupuleti Janila
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Shaoxiong Li
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Min Wang
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Tong Wang
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Jie Sun
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Xingyu Li
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Chunyan Li
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Mian Wang
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Lina Yu
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Shijie Wen
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Sube Singh
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Zhen Yang
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Jinming Zhao
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Chushu Zhang
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Yue Yu
- Macrogen Millennium Genomics Company, Shenzhen 518000, China;
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- Jie Bi
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
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- Xiaojun Zhang
- College of Food Science and Engineering, Qingdao Agricultural University, Qingdao 266000, China;
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- Zhong-Jian Liu
- Shenzhen Key Laboratory for Orchid Conservation and Utilization, National Orchid Conservation Center of China and Orchid Conservation and Research Center of Shenzhen, Shenzhen 518000, China;
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- Andrew H. Paterson
- Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30605;
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- Shuping Wang
- Shandong Shofine Seed Company, Jiaxiang 272400, China;
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- Xuanqiang Liang
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Guangdong Key Laboratory for Crops Genetic Improvement, Guangzhou 510640, China;
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- Rajeev K. Varshney
- International Crops Research Institute for the Semi-Arid Tropics, Hyderabad 502324, India;
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- Shanlin Yu
- Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266000, China;
書誌事項
- 公開日
- 2016-05-31
- 権利情報
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- http://www.pnas.org/preview_site/misc/userlicense.xhtml
- DOI
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- 10.1073/pnas.1600899113
- 公開者
- Proceedings of the National Academy of Sciences
この論文をさがす
説明
<jats:title>Significance</jats:title><jats:p>We present a draft genome of the peanut A-genome progenitor,<jats:italic>Arachis duranensis</jats:italic>, providing details on total genes present in the genome. Genome analysis suggests that the peanut lineage was affected by at least three polyploidizations since the origin of eudicots. Resequencing of synthetic<jats:italic>Arachis</jats:italic>tetraploids reveals extensive gene conversion since their formation by human hands. The<jats:italic>A. duranensis</jats:italic>genome provides a major source of candidate genes for fructification, oil biosynthesis, and allergens, expanding knowledge of understudied areas of plant biology and human health impacts of plants. This study also provides millions of structural variations that can be used as genetic markers for the development of improved peanut varieties through genomics-assisted breeding.</jats:p>
収録刊行物
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- Proceedings of the National Academy of Sciences
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Proceedings of the National Academy of Sciences 113 (24), 6785-6790, 2016-05-31
Proceedings of the National Academy of Sciences
