Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic<i>Fusarium</i>that Includes the<i>Fusarium solani</i>Species Complex

DOI Web Site 参考文献65件 オープンアクセス
  • David M. Geiser
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Abdullah M. S. Al-Hatmi
    Directorate General of Health Services, Ministry of Health, Ibri, Oman
  • Takayuki Aoki
    Genetic Resources Center, National Agriculture and Food Research Organization, Tsukuba, Japan
  • Tsutomu Arie
    Tokyo University of Agriculture and Technology, Fuchu, Japan
  • Virgilio Balmas
    Dipartimento di Agraria, Università degli Studi di Sassari, Sassari, Italy
  • Irene Barnes
    Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
  • Gary C. Bergstrom
    Plant Pathology and Plant-Microbe Biology Section, Cornell University, Ithaca, NY 14853, U.S.A.
  • Madan K. Bhattacharyya
    Department of Agronomy, Iowa State University, Ames, IA 50011, U.S.A.
  • Cheryl L. Blomquist
    Plant Pest Diagnostics Branch, California Department of Food and Agriculture, Sacramento, CA 95832, U.S.A.
  • Robert L. Bowden
    Hard Winter Wheat Genetics Research Unit, U.S. Department of Agriculture Agricultural Research Service (USDA-ARS), Manhattan, KS 66506, U.S.A.
  • Balázs Brankovics
    Wageningen Plant Research, Wageningen University and Research, Wageningen, The Netherlands
  • Daren W. Brown
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Lester W. Burgess
    Sydney Institute of Agriculture, Faculty of Science, University of Sydney, Sydney, Australia
  • Kathryn Bushley
    Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN 55108, U.S.A.
  • Mark Busman
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • José F. Cano-Lira
    Mycology Unit and IISPV, Universitat Rovira i Virgili Medical School, Reus, Spain
  • Joseph D. Carrillo
    Gulf Coast Research and Education Center, University of Florida, Wimauma, FL 33598, U.S.A.
  • Hao-Xun Chang
    Department of Plant Pathology and Microbiology, National Taiwan University, Taipei, Taiwan
  • Chi-Yu Chen
    Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
  • Wanquan Chen
    State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agriculture Sciences, Beijing, People’s Republic of China
  • Martin Chilvers
    Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, U.S.A.
  • Sofia Chulze
    Research Institute on Mycology and Mycotoxicology, National Scientific and Technical Research Council, National University of Rio Cuarto, Rio Cuarto, Córdoba, Argentina
  • Jeffrey J. Coleman
    Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849, U.S.A.
  • Christina A. Cuomo
    Broad Institute of Harvard and MIT, Cambridge, MA 02142, U.S.A.
  • Z. Wilhelm de Beer
    Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
  • G. Sybren de Hoog
    Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
  • Johanna Del Castillo-Múnera
    Department of Plant Pathology, University of California, Davis, CA 95616, U.S.A.
  • Emerson M. Del Ponte
    Departamento de Fitopatologia, Universidade Federal de Viçosa, Viçosa, Brazil
  • Javier Diéguez-Uribeondo
    Department of Mycology, Real Jardín Botánico CSIC, Madrid, Spain
  • Antonio Di Pietro
    Departamento de Genética, Campus de Excelencia Internacional Agroalimentario, Universidad de Córdoba, Córdoba, Spain
  • Véronique Edel-Hermann
    French National Institute for Agriculture, Food, and Environment (INRAE), Dijon, France
  • Wade H. Elmer
    Department of Plant Pathology and Ecology, Connecticut Agricultural Experiment Station, New Haven, CT 06504, U.S.A.
  • Lynn Epstein
    Department of Plant Pathology, University of California, Davis, CA 95616, U.S.A.
  • Akif Eskalen
    Department of Plant Pathology, University of California, Davis, CA 95616, U.S.A.
  • Maria Carmela Esposto
    Department of Biomedical Sciences for Health, University of Milano, Milan, Italy
  • Kathryne L. Everts
    Wye Research and Education Center, University of Maryland, Queenstown, MD 21658, U.S.A.
  • Sylvia P. Fernández-Pavía
    Laboratorio de Patología Vegetal, Instituto de Investigaciones Agropecuarias y Forestales, Universidad Michoacana de San Nicolás de Hidalgo, Tarímbaro, Michoacán 58880, México
  • Gilvan Ferreira da Silva
    Embrapa Amazônia Ocidental, Manaus, Brazil
  • Nora A. Foroud
    Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, Alberta T1J 4B1, Canada
  • Gerda Fourie
    Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
  • Rasmus J. N. Frandsen
    Department of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark
  • Stanley Freeman
    Department of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
  • Michael Freitag
    Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, U.S.A.
  • Omer Frenkel
    Department of Plant Pathology and Weed Research, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
  • Kevin K. Fuller
    Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, U.S.A.
  • Tatiana Gagkaeva
    Laboratory of Mycology and Phytopathology, All-Russian Institute of Plant Protection, St. Petersburg-Pushkin, Russia
  • Donald M. Gardiner
    CSIRO Agriculture and Food, St. Lucia, Australia
  • Anthony E. Glenn
    Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A.
  • Scott E. Gold
    Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A.
  • Thomas R. Gordon
    Department of Plant Pathology, University of California, Davis, CA 95616, U.S.A.
  • Nancy F. Gregory
    Department of Plant and Soil Sciences, University of Delaware, DE 19716, U.S.A.
  • Marieka Gryzenhout
    Department of Genetics, University of the Free State, Bloemfontein, South Africa
  • Josep Guarro
    Unitat de Microbiologia, Departament de Ciències Mèdiques Bàsiques, Universitat Rovira i Virgili, Reus, Spain
  • Beth K. Gugino
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Santiago Gutierrez
    Department of Molecular Biology, Universidad de Leon, Leon, Spain
  • Kim E. Hammond-Kosack
    Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom
  • Linda J. Harris
    Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario K1A 0C6, Canada
  • Mónika Homa
    MTA-SZTE Fungal Pathogenicity Mechanisms Research Group, Hungarian Academy of Sciences, University of Szeged, Szeged, Hungary
  • Cheng-Fang Hong
    Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
  • László Hornok
    Institute of Plant Protection, Szent István University, Gödöllő, Hungary
  • Jenn-Wen Huang
    Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
  • Macit Ilkit
    Division of Mycology, Faculty of Medicine, University of Çukurova, Sarıçam, Adana, Turkey
  • Adriaana Jacobs
    Biosystematics Unit, Plant Health and Protection, Agricultural Research Council, Pretoria, South Africa
  • Karin Jacobs
    Department of Microbiology, Stellenbosch University, Matieland, South Africa
  • Cong Jiang
    College of Plant Protection, Northwest Agriculture and Forestry University, Xianyang, People’s Republic of China
  • María del Mar Jiménez-Gasco
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Seogchan Kang
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Matthew T. Kasson
    Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV 26506, U.S.A.
  • Kemal Kazan
    CSIRO Agriculture and Food, St. Lucia, Australia
  • John C. Kennell
    Biology Department, St. Louis University, St. Louis, MO 63101, U.S.A.
  • Hye-Seon Kim
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • H. Corby Kistler
    USDA-ARS Cereal Disease Laboratory, University of Minnesota, St. Paul, MN 55108, U.S.A.
  • Gretchen A. Kuldau
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Tomasz Kulik
    Department of Botany and Nature Protection, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland
  • Oliver Kurzai
    German National Reference Center for Invasive Fungal Infections NRZMyk, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knoell Institute, Jena, Germany
  • Imane Laraba
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Matthew H. Laurence
    Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
  • Theresa Lee
    Microbial Safety Team, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, Republic of Korea
  • Yin-Won Lee
    Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea
  • Yong-Hwan Lee
    Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea
  • John F. Leslie
    Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, U.S.A.
  • Edward C. Y. Liew
    Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
  • Lily W. Lofton
    Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A.
  • Antonio F. Logrieco
    Institute of Sciences of Food Production, Research National Council, Bari, Italy
  • Manuel S. López-Berges
    Departamento de Genética, Campus de Excelencia Internacional Agroalimentario, Universidad de Córdoba, Córdoba, Spain
  • Alicia G. Luque
    Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Referencia de Micología, Universidad Nacional de Rosario, Rosario, Argentina
  • Erik Lysøe
    Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research, Høgskoleveien, Ås, Norway
  • Li-Jun Ma
    Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, U.S.A.
  • Robert E. Marra
    Department of Plant Pathology and Ecology, Connecticut Agricultural Experiment Station, New Haven, CT 06504, U.S.A.
  • Frank N. Martin
    Crop Improvement and Protection Research Unit, ARS-USDA, Salinas, CA 93905, U.S.A.
  • Sara R. May
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Susan P. McCormick
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Chyanna McGee
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Jacques F. Meis
    Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
  • Quirico Migheli
    Dipartimento di Agraria and Nucleo Ricerca Desertificazione, Università degli Studi di Sassari, Sassari, Italy
  • N. M. I. Mohamed Nor
    School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
  • Michel Monod
    Laboratoire de Mycologie, Service de Dermatologie, Centre Hospitalier Universitaire Vaudois, 1011 Lausanne, Switzerland
  • Antonio Moretti
    Institute of Sciences of Food Production, Research National Council, Bari, Italy
  • Diane Mostert
    Department of Plant Pathology, Stellenbosch University, Matieland, South Africa
  • Giuseppina Mulè
    Institute of Sciences of Food Production, Research National Council, Bari, Italy
  • Françoise Munaut
    Brussels, Belgium
  • Gary P. Munkvold
    Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, U.S.A.
  • Paul Nicholson
    Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, United Kingdom
  • Marcio Nucci
    Hospital Universitário, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
  • Kerry O’Donnell
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Matias Pasquali
    Department of Food, Environmental and Nutritional Sciences, University of Milano, Milan, Italy
  • Ludwig H. Pfenning
    Departamento de Fitopatologia, Universidade Federal de Lavras, Lavras, Minas Gerais State, Brazil
  • Anna Prigitano
    Department of Biomedical Sciences for Health, University of Milano, Milan, Italy
  • Robert H. Proctor
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Stéphane Ranque
    Institut Hospitalier Universitaire Méditerranée Infection, Aix Marseille University, Marseille, France
  • Stephen A. Rehner
    Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, MD 20705, U.S.A.
  • Martijn Rep
    Swammerdam Institute for Life Science, University of Amsterdam, Amsterdam, The Netherlands
  • Gerardo Rodríguez-Alvarado
    Laboratorio de Patología Vegetal, Instituto de Investigaciones Agropecuarias y Forestales, Universidad Michoacana de San Nicolás de Hidalgo, Tarímbaro, Michoacán 58880, México
  • Lindy Joy Rose
    Department of Plant Pathology, Stellenbosch University, Matieland, South Africa
  • Mitchell G. Roth
    Department of Plant Pathology, University of Wisconsin, Madison, WI 53706, U.S.A.
  • Carmen Ruiz-Roldán
    Departamento de Genética, Campus de Excelencia Internacional Agroalimentario, Universidad de Córdoba, Córdoba, Spain
  • Amgad A. Saleh
    Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, Riyadh 11451, Saudi Arabia
  • Baharuddin Salleh
    School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
  • Hyunkyu Sang
    Department of Integrative Food, Bioscience and Biotechnology, Chonnam National University, Gwangju, Republic of Korea
  • María Mercedes Scandiani
    Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Referencia de Micología, Universidad Nacional de Rosario, Rosario, Argentina
  • Jonathan Scauflaire
    Centre de Recherche et de Formation Agronomie, Haute Ecole Louvain en Hainaut, Montignies-sur-Sambre, Belgium
  • David G. Schmale
    School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, U.S.A.
  • Dylan P. G. Short
    Amycel/Spawn Mate, San Juan Bautista, CA 95045, U.S.A.
  • Adnan Šišić
    Department of Ecological Plant Protection, University of Kassel, Witzenhausen, Germany
  • Jason A. Smith
    School of Forest Resources and Conservation, University of Florida, Gainesville, FL 32611, U.S.A.
  • Christopher W. Smyth
    Department of Biological Sciences, Binghamton University, State University of New York, Binghamton, NY 13902, U.S.A.
  • Hokyoung Son
    Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea
  • Ellie Spahr
    Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV 26506, U.S.A.
  • Jason E. Stajich
    Department of Microbiology and Plant Pathology, University of California, Riverside, CA 92521, U.S.A.
  • Emma Steenkamp
    Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
  • Christian Steinberg
    Agroécologie, AgroSup Dijon, INRAE, University of Bourgogne Franche-Comté, Dijon, France
  • Rajagopal Subramaniam
    Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario K1A 0C6, Canada
  • Haruhisa Suga
    Life Science Research Center, Gifu University, Gifu, Japan
  • Brett A. Summerell
    Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
  • Antonella Susca
    Institute of Sciences of Food Production, Research National Council, Bari, Italy
  • Cassandra L. Swett
    Department of Plant Pathology, University of California, Davis, CA 95616, U.S.A.
  • Christopher Toomajian
    Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, U.S.A.
  • Terry J. Torres-Cruz
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Anna M. Tortorano
    Department of Biomedical Sciences for Health, University of Milano, Milan, Italy
  • Martin Urban
    Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom
  • Lisa J. Vaillancourt
    Department of Plant Pathology, University of Kentucky, Lexington, KY 40546, U.S.A.
  • Gary E. Vallad
    Gulf Coast Research and Education Center, University of Florida, Wimauma, FL 33598, U.S.A.
  • Theo A. J. van der Lee
    Wageningen Plant Research, Wageningen University and Research, Wageningen, The Netherlands
  • Dan Vanderpool
    Department of Biology, Indiana University, Bloomington, IN 47405, U.S.A.
  • Anne D. van Diepeningen
    Wageningen Plant Research, Wageningen University and Research, Wageningen, The Netherlands
  • Martha M. Vaughan
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Eduard Venter
    Department of Botany and Plant Biotechnology, University of Johannesburg, Auckland Park, South Africa
  • Marcele Vermeulen
    Department of Microbial Biochemical and Food Biotechnology, University of the Free State, Bloemfontein, South Africa
  • Paul E. Verweij
    Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
  • Altus Viljoen
    Department of Plant Pathology, Stellenbosch University, Matieland, South Africa
  • Cees Waalwijk
    Wageningen Plant Research, Wageningen University and Research, Wageningen, The Netherlands
  • Emma C. Wallace
    Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A.
  • Grit Walther
    German National Reference Center for Invasive Fungal Infections NRZMyk, Leibniz Institute for Natural Product Research and Infection Biology, Hans Knoell Institute, Jena, Germany
  • Jie Wang
    DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94702.
  • Todd J. Ward
    Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A.
  • Brian L. Wickes
    Department of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A.
  • Nathan P. Wiederhold
    Department of Pathology, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A.
  • Michael J. Wingfield
    Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
  • Ana K. M. Wood
    Department of Biointeractions and Crop Protection, Rothamsted Research, Harpenden, United Kingdom
  • Jin-Rong Xu
    Department of Pathology, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A.
  • Xiao-Bing Yang
    Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, United Kingdom
  • Tapani Yli-Mattila
    Department of Biochemistry, University of Turku, Turku, Finland
  • Sung-Hwan Yun
    Department of Medical Biotechnology, Soonchunhyang University, Asan, Republic of Korea
  • Latiffah Zakaria
    School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
  • Hao Zhang
    State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agriculture Sciences, Beijing, People’s Republic of China
  • Ning Zhang
    Department of Plant Biology, Rutgers University, New Brunswick, NJ 08901, U.S.A.
  • Sean X. Zhang
    Department of Pathology, Johns Hopkins University, Baltimore, MD 21287, U.S.A.
  • Xue Zhang
    College of Plant Protection, Northwest Agriculture and Forestry University, Xianyang, People’s Republic of China

抄録

<jats:p>Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.</jats:p>

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  • Phytopathology®

    Phytopathology® 111 (7), 1064-1079, 2021-07

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