HiCUP: pipeline for mapping and processing Hi-C data

DOI Web Site Web Site Web Site 5 Citations

Description

<ns3:p>HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experiments, which are techniques used to investigate three-dimensional genomic organisation. The pipeline maps data to a specified reference genome and removes artefacts that would otherwise hinder subsequent analysis. HiCUP also produces an easy-to-interpret yet detailed quality control (QC) report that assists in refining experimental protocols for future studies. The software is freely available and has already been used for processing Hi-C and CHi-C data in several recently published peer-reviewed studies.</ns3:p>

Journal

  • F1000Research

    F1000Research 4 1310-, 2015-11-20

    F1000 Research Ltd

Citations (5)*help

See more

Report a problem

Back to top