Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation

  • Mary Hongying Cheng
    Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213;
  • She Zhang
    Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213;
  • Rebecca A. Porritt
    Department of Pediatrics, Division of Pediatric Infectious Diseases and Immunology, Cedars-Sinai Medical Center, Los Angeles, CA 90048;
  • Magali Noval Rivas
    Department of Pediatrics, Division of Pediatric Infectious Diseases and Immunology, Cedars-Sinai Medical Center, Los Angeles, CA 90048;
  • Lisa Paschold
    Department of Internal Medicine IV, Oncology/Hematology, Martin Luther University Halle-Wittenberg, 06120 Halle (Saale), Germany
  • Edith Willscher
    Department of Internal Medicine IV, Oncology/Hematology, Martin Luther University Halle-Wittenberg, 06120 Halle (Saale), Germany
  • Mascha Binder
    Department of Internal Medicine IV, Oncology/Hematology, Martin Luther University Halle-Wittenberg, 06120 Halle (Saale), Germany
  • Moshe Arditi
    Department of Pediatrics, Division of Pediatric Infectious Diseases and Immunology, Cedars-Sinai Medical Center, Los Angeles, CA 90048;
  • Ivet Bahar
    Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213;

抄録

<jats:title>Significance</jats:title><jats:p>A hyperinflammatory syndrome reminiscent of toxic shock syndrome (TSS) is observed in severe COVID-19 patients, including children with Multisystem Inflammatory Syndrome in Children (MIS-C). TSS is typically caused by pathogenic superantigens stimulating excessive activation of the adaptive immune system. We show that SARS-CoV-2 spike contains sequence and structure motifs highly similar to those of a bacterial superantigen and may directly bind T cell receptors. We further report a skewed T cell receptor repertoire in COVID-19 patients with severe hyperinflammation, in support of such a superantigenic effect. Notably, the superantigen-like motif is not present in other SARS family coronaviruses, which may explain the unique potential for SARS-CoV-2 to cause both MIS-C and the cytokine storm observed in adult COVID-19.</jats:p>

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