TreeSnatcher: coding trees from images
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- Thomas Laubach
- 1 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, 2University of Vienna, 3Medical University of Vienna and 4University of Veterinary Medicine Vienna, Vienna, Austria
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- Arndt von Haeseler
- 1 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, 2University of Vienna, 3Medical University of Vienna and 4University of Veterinary Medicine Vienna, Vienna, Austria
Abstract
<jats:title>Abstract</jats:title> <jats:p>Summary: TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds.</jats:p> <jats:p>Availability: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher.</jats:p> <jats:p>Contact: arndt.von.haeseler@univie.ac.at</jats:p>
Journal
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- Bioinformatics
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Bioinformatics 23 (24), 3384-3385, 2007-09-24
Oxford University Press (OUP)
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Keywords
Details 詳細情報について
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- CRID
- 1360579815749219968
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- ISSN
- 13674811
- 13674803
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- Data Source
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- Crossref