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- James J Davis
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Alice R Wattam
- Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA
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- Ramy K Aziz
- Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, 11562 Cairo, Egypt
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- Thomas Brettin
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Ralph Butler
- Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA
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- Rory M Butler
- Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA
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- Philippe Chlenski
- Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
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- Neal Conrad
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Allan Dickerman
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Emily M Dietrich
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Joseph L Gabbard
- Virginia Tech, Blacksburg, VA 24061, USA
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- Svetlana Gerdes
- Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
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- Andrew Guard
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Ronald W Kenyon
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Dustin Machi
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Chunhong Mao
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Dan Murphy-Olson
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Marcus Nguyen
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Eric K Nordberg
- Transportation Institute, Virginia Tech University, Blacksburg, VA 24061, USA
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- Gary J Olsen
- Department of Microbiology, University of Illinois, Urbana, IL 61801, USA
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- Robert D Olson
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Jamie C Overbeek
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Ross Overbeek
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Bruce Parrello
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Gordon D Pusch
- Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
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- Maulik Shukla
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Chris Thomas
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Margo VanOeffelen
- Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
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- Veronika Vonstein
- Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
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- Andrew S Warren
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Fangfang Xia
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Dawen Xie
- Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA
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- Hyunseung Yoo
- University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA
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- Rick Stevens
- Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA
書誌事項
- 公開日
- 2019-10-31
- DOI
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- 10.1093/nar/gkz943
- 公開者
- Oxford University Press (OUP)
この論文をさがす
説明
<jats:title>Abstract</jats:title> <jats:p>The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.</jats:p>
収録刊行物
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- Nucleic Acids Research
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Nucleic Acids Research 48 (D1), D606-, 2019-10-31
Oxford University Press (OUP)
