A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

DOI Web Site 被引用文献48件
  • Jinshui Zheng
    Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology, Hubei Key Laboratory of Agricultural Bioinformatics, Wuhan, Hubei, PR China
  • Stijn Wittouck
    Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium
  • Elisa Salvetti
    Dept. of Biotechnology, University of Verona, Verona, Italy
  • Charles M.A.P. Franz
    Max Rubner-Institut, Department of Microbiology and Biotechnology, Kiel, Germany
  • Hugh M.B. Harris
    School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland
  • Paola Mattarelli
    University of Bologna, Dept. of Agricultural and Food Sciences, Bologna, Italy
  • Paul W. O’Toole
    School of Microbiology & APC Microbiome Ireland, University College Cork, Co. Cork, Ireland
  • Bruno Pot
    Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Vrije Universiteit Brussel, Brussels, Belgium
  • Peter Vandamme
    Laboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium
  • Jens Walter
    Department of Biological Sciences, University of Alberta, Edmonton, Canada
  • Koichi Watanabe
    Food Industry Research and Development Institute, Bioresource Collection and Research Center, Hsinchu, Taiwan, ROC
  • Sander Wuyts
    Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium
  • Giovanna E. Felis
    Dept. of Biotechnology, University of Verona, Verona, Italy
  • Michael G. Gänzle
    Hubei University of Technology, College of Bioengineering and Food Science, Wuhan, Hubei, PR China
  • Sarah Lebeer
    Research Group Environmental Ecology and Applied Microbiology, Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium

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<jats:p>The genus <jats:italic> <jats:named-content content-type="genus"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5320" xlink:type="simple">Lactobacillus</jats:ext-link> </jats:named-content> </jats:italic> comprises 261 species (at March 2020) that are extremely diverse at phenotypic, ecological and genotypic levels. This study evaluated the taxonomy of <jats:italic> <jats:named-content content-type="family"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5319" xlink:type="simple">Lactobacillaceae</jats:ext-link> </jats:named-content> </jats:italic> and <jats:italic> <jats:named-content content-type="family"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5567" xlink:type="simple">Leuconostocaceae</jats:ext-link> </jats:named-content> </jats:italic> on the basis of whole genome sequences. Parameters that were evaluated included core genome phylogeny, (conserved) pairwise average amino acid identity, clade-specific signature genes, physiological criteria and the ecology of the organisms. Based on this polyphasic approach, we propose reclassification of the genus <jats:italic> <jats:named-content content-type="genus"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5320" xlink:type="simple">Lactobacillus</jats:ext-link> </jats:named-content> </jats:italic> into 25 genera including the emended genus <jats:italic> <jats:named-content content-type="genus"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5320" xlink:type="simple">Lactobacillus</jats:ext-link> </jats:named-content> </jats:italic> <jats:underline>,</jats:underline> which includes host-adapted organisms that have been referred to as the <jats:italic> <jats:named-content content-type="species"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.10805" xlink:type="simple">Lactobacillus delbrueckii</jats:ext-link> </jats:named-content> </jats:italic> group, <jats:italic> <jats:named-content content-type="genus"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5447" xlink:type="simple">Paralactobacillus</jats:ext-link> </jats:named-content> </jats:italic> and 23 novel genera for which the names <jats:italic>Holzapfelia</jats:italic>, <jats:italic>Amylolactobacillus</jats:italic>, <jats:italic>Bombilactobacillus</jats:italic>, <jats:italic>Companilactobacillus</jats:italic>, <jats:italic>Lapidilactobacillus</jats:italic>, <jats:italic>Agrilactobacillus</jats:italic>, <jats:italic>Schleiferilactobacillus</jats:italic>, <jats:italic>Loigolactobacilus</jats:italic>, <jats:italic>Lacticaseibacillus</jats:italic>, <jats:italic>Latilactobacillus</jats:italic>, <jats:italic>Dellaglioa</jats:italic>, <jats:italic>Liquorilactobacillus</jats:italic>, <jats:italic>Ligilactobacillus</jats:italic>, <jats:italic>Lactiplantibacillus</jats:italic>, <jats:italic>Furfurilactobacillus</jats:italic>, <jats:italic>Paucilactobacillus</jats:italic>, <jats:italic>Limosilactobacillus</jats:italic>, <jats:italic>Fructilactobacillus</jats:italic>, <jats:italic>Acetilactobacillus</jats:italic>, <jats:italic>Apilactobacillus</jats:italic>, <jats:italic>Levilactobacillus</jats:italic>, <jats:italic>Secundilactobacillus</jats:italic> and <jats:italic>Lentilactobacillus</jats:italic> are proposed. We also propose to emend the description of the family <jats:italic> <jats:named-content content-type="family"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5319" xlink:type="simple">Lactobacillaceae</jats:ext-link> </jats:named-content> </jats:italic> to include all genera that were previously included in families <jats:italic> <jats:named-content content-type="family"> <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://doi.org/10.1601/nm.5319" xlink:type="simple">Lactobacillaceae< ...

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