Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes
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- Hélène Marchandin
- Centre Hospitalier et Universitaire de Montpellier, Hôpital Arnaud de Villeneuve, Laboratoire de Bactériologie, 371 Avenue du Doyen Gaston Giraud, 34295 Montpellier Cedex 5, France
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- Corinne Teyssier
- Université Montpellier 1, EA 3755, Laboratoire de Bactériologie-Virologie, Faculté de Pharmacie, 15, Avenue Charles Flahault, BP 14491, 34060 Montpellier Cedex 5, France
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- Josiane Campos
- Centre Hospitalier et Universitaire de Montpellier, Hôpital Arnaud de Villeneuve, Laboratoire de Bactériologie, 371 Avenue du Doyen Gaston Giraud, 34295 Montpellier Cedex 5, France
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- Hélène Jean-Pierre
- Centre Hospitalier et Universitaire de Montpellier, Hôpital Arnaud de Villeneuve, Laboratoire de Bactériologie, 371 Avenue du Doyen Gaston Giraud, 34295 Montpellier Cedex 5, France
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- Frédéric Roger
- Université Montpellier 1, EA 3755, Laboratoire de Bactériologie-Virologie, Faculté de Pharmacie, 15, Avenue Charles Flahault, BP 14491, 34060 Montpellier Cedex 5, France
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- Bernard Gay
- Université Montpellier 1 et Université Montpellier 2, UMR 5236-CPBS CNRS, Centre d'études d'agents pathogènes et Biotechnologies pour la Santé, Institut de Biologie, 4, Boulevard Henri IV, CS 69033, 34965 Montpellier Cedex 2, France
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- Jean-Philippe Carlier
- Institut Pasteur, Centre National de Référence des Bactéries Anaérobies et du Botulisme, 25 rue du Dr Roux, 75724 Paris Cedex 15, France
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- Estelle Jumas-Bilak
- Université Montpellier 1, EA 3755, Laboratoire de Bactériologie-Virologie, Faculté de Pharmacie, 15, Avenue Charles Flahault, BP 14491, 34060 Montpellier Cedex 5, France
抄録
<jats:p>Three strains of a hitherto unknown, Gram-negative, tiny, anaerobic coccus were collected from human clinical samples originating from skin and soft tissues. The three isolates displayed at least 99.9 % identity in their 16S rRNA gene sequences and more than 99.8 % identity in their <jats:italic>dnaK</jats:italic> gene sequences. The isolates were affiliated to the family <jats:italic>Veillonellaceae</jats:italic>, the coccobacillus <jats:italic>Dialister micraerophilus</jats:italic> being the most closely related species, but there was no more than 91.1 % identity in the 16S rRNA gene sequence between this species and the three isolates. Phylogeny based on the 16S rRNA gene confirmed that the three strains represent a novel and robust lineage within the current family <jats:italic>Veillonellaceae</jats:italic>. A similar genomic structure was demonstrated for the three isolates by PFGE-based analysis. Morphology and metabolic end products, as well as genotypic and phylogenetic data supported the proposal of the novel genus <jats:italic>Negativicoccus</jats:italic> gen. nov., with the novel species <jats:italic>Negativicoccus succinicivorans</jats:italic> sp. nov. [type strain ADV 07/08/06-B-1388<jats:sup>T</jats:sup> (=AIP 149.07<jats:sup>T</jats:sup>=CIP 109806<jats:sup>T</jats:sup>=DSM 21255<jats:sup>T</jats:sup>=CCUG 56017<jats:sup>T</jats:sup>) as type species]. Phylogenetic analyses based on the 16S rRNA gene sequences of members of the phylum <jats:italic>Firmicutes</jats:italic> and other phyla indicated that the family <jats:italic>Veillonellaceae</jats:italic> forms a robust lineage clearly separated from those of the classes ‘<jats:italic>Bacilli</jats:italic>’, ‘<jats:italic>Clostridia</jats:italic>’, <jats:italic>Thermolithobacteria</jats:italic> and ‘<jats:italic>Erysipelotrichi</jats:italic>’ in the phylum <jats:italic>Firmicutes</jats:italic>. Therefore, we propose that this family is a class-level taxon in the phylum <jats:italic>Firmicutes</jats:italic>, for which the name <jats:italic>Negativicutes</jats:italic> classis nov. is proposed, based on the Gram-negative type of cell wall of its members, with the type order <jats:italic>Selenomonadales</jats:italic> ord. nov. In this order, a novel family, <jats:italic>Acidaminococcaceae</jats:italic> fam. nov., is proposed and description of the family <jats:italic>Veillonellaceae</jats:italic> is emended.</jats:p>
収録刊行物
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- International Journal of Systematic and Evolutionary Microbiology
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International Journal of Systematic and Evolutionary Microbiology 60 (6), 1271-1279, 2010-06-01
Microbiology Society