Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
説明
<jats:title>Abstract</jats:title> <jats:sec> <jats:title>Background</jats:title> <jats:p>The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl developer environment.</jats:p> </jats:sec> <jats:sec> <jats:title>Description</jats:title> <jats:p>AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus <jats:italic>Ashbya gossypii</jats:italic>. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast <jats:italic>Saccharomyces cerevisiae</jats:italic>. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in <jats:italic>A. gossypii</jats:italic> and <jats:italic>S. cerevisiae</jats:italic>.</jats:p> </jats:sec> <jats:sec> <jats:title>Conclusion</jats:title> <jats:p>AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with <jats:italic>S. cerevisiae</jats:italic> orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at <jats:ext-link xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://agd.vital-it.ch/" ext-link-type="uri">http://agd.vital-it.ch/</jats:ext-link>.</jats:p> </jats:sec>
収録刊行物
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- BMC Genomics
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BMC Genomics 8 (1), 9-, 2007-01-09
Springer Science and Business Media LLC
