Efficient gene targeting and removal of foreign <scp>DNA</scp> by homologous recombination in the picoeukaryote <i>Ostreococcus</i>

  • Jean‐Claude Lozano
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France
  • Philippe Schatt
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France
  • Hugo Botebol
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France
  • Valérie Vergé
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France
  • Emmanuel Lesuisse
    Lab Mitochondria Metals and Oxidative Stress Institut Jacques Monod CNRS‐Université Paris Diderot Paris France
  • Stéphane Blain
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France
  • Isabelle A. Carré
    School of Life Sciences University of Warwick Coventry UK
  • François‐Yves Bouget
    Sorbonne Universités UPMC Univ Paris 06 UMR 7621 Laboratoire d'Océanographie Microbienne Observatoire Océanologique F‐66650 Banyuls/mer France

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<jats:title>Summary</jats:title><jats:p>With fewer than 8000 genes and a minimalist cellular organization, the green picoalga <jats:italic>Ostreococcus tauri</jats:italic> is one of the simplest photosynthetic eukaryotes. <jats:italic>Ostreococcus tauri</jats:italic> contains many plant‐specific genes but exhibits a very low gene redundancy. The haploid genome is extremely dense with few repeated sequences and rare transposons. Thanks to the implementation of genetic transformation and vectors for inducible overexpression/knockdown this picoeukaryotic alga has emerged in recent years as a model organism for functional genomics analyses and systems biology. Here we report the development of an efficient gene targeting technique which we use to knock out the <jats:italic>nitrate reductase</jats:italic> and <jats:italic>ferritin</jats:italic> genes and to knock in a luciferase reporter in frame to the ferritin native protein. Furthermore, we show that the frequency of insertion by homologous recombination is greatly enhanced when the transgene is designed to replace an existing genomic insertion. We propose that a natural mechanism based on homologous recombination may operate to remove inserted <jats:styled-content style="fixed-case">DNA</jats:styled-content> sequences from the genome.</jats:p>

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