The khmer software package: enabling efficient nucleotide sequence analysis
Abstract
<ns3:p>The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normalization. khmer is implemented in C++ and Python, and is freely available under the BSD license at <ns3:ext-link xmlns:ns4="http://www.w3.org/1999/xlink" ext-link-type="uri" ns4:href="https://github.com/dib-lab/khmer/">https://github.com/dib-lab/khmer/</ns3:ext-link>.</ns3:p>
Journal
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- F1000Research
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F1000Research 4 900-, 2015-09-25
F1000 Research Ltd
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Details 詳細情報について
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- CRID
- 1364233268330419200
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- ISSN
- 20461402
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- Data Source
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- Crossref