Management and application of brain and neuronal data by database system

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  • IKENO Hidetoshi
    School of Human Science and Environment, University of Hyogo
  • KAZAWA Tomoki
    Research Center for Advanced Science and Technology, The University of Tokyo
  • NAMIKI Shigehiro
    Research Center for Advanced Science and Technology, The University of Tokyo
  • HAUPT Stephan Shuichi
    Research Center for Advanced Science and Technology, The University of Tokyo
  • NISHIKAWA Ikuko
    College of Information Science and Engineering, Ritsumeikan University
  • KANZAKI Ryohei
    Research Center for Advanced Science and Technology, The University of Tokyo

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Other Title
  • データベースを用いた脳・神経細胞データの管理と活用
  • データベース オ モチイタ ノウ ・ シンケイ サイボウ データ ノ カンリ ト カツヨウ

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Abstract

In this article, we introduce to construct and use a database system in the laboratory for research resource management and application. The combination of XAMPP package and XOOPS Cube is providing a web based data management environment easily. As an example of usage of database contents, it was shown that a method for register of neuron morphologies on the standard brain coordinate is documented. It was conducted by using free software, ITK-SNAP and Fiji, so this protocol would be applied for the integration of morphological data obtained by individuals.

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