Analysis of genetic diversity and morphological traits of Japanese Lotus japonicus for establishment of a core collection
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- Kai Sayumi
- Faculty of Agriculture, University of Miyazaki
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- Tanaka Hidenori
- Frontier Science Research Center, University of Miyazaki
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- Hashiguchi Masatsugu
- Frontier Science Research Center, University of Miyazaki
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- Iwata Hiroyoshi
- Graduate School of Agriculture and Life Sciences, University of Tokyo
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- Akashi Ryo
- Frontier Science Research Center, University of Miyazaki
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Lotus japonicus is a model legume used by researchers worldwide to study nodulation and other aspects of legume biology. We investigated 15 morphological traits in a large collection of wild L. japonicus accessions collected in Japan, and also analyzed the genetic diversity among them, in order to develop a core collection based on genome-wide SSR polymorphisms. We found a wide diversity of morphological traits among the accessions. A total of 321 putative alleles were detected using 25 SSR primer pairs. The average observed and expected heterozygosity scores for individual loci were 0.014 and 0.772, respectively, indicating a high degree of homozygosity. The accessions were divided into 9 clusters based on GST’ and STRUCTURE analyses. In addition, we selected 20 accessions to serve as the representative core collection based on SSR analysis. The range of morphological traits in the core collection was representative of that found in the entire collection. This core collection will be useful for genome-wide studies and data obtained for this model species should lead to numerous practical applications for crop legumes. All accessions from the entire collection are available from Legume Base (http://www.legumebase.brc.miyazaki-u.ac.jp/), a section of the National BioResource Project in Japan.<br>
収録刊行物
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- Breeding Science
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Breeding Science 60 (4), 436-446, 2010
日本育種学会
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詳細情報 詳細情報について
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- CRID
- 1390001204722251392
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- NII論文ID
- 130004146254
- 10027120529
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- NII書誌ID
- AA11317194
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- ISSN
- 13473735
- 13447610
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- NDL書誌ID
- 10925744
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- 本文言語コード
- en
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- データソース種別
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- JaLC
- NDL
- Crossref
- CiNii Articles
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- 抄録ライセンスフラグ
- 使用不可