Functional genomics of tomato in a post-genome-sequencing phase
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- Aoki Koh
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University Kazusa DNA Research Institute
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- Ogata Yoshiyuki
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University
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- Igarashi Kaori
- School of Agriculture, Meiji University
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- Yano Kentaro
- School of Agriculture, Meiji University
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- Nagasaki Hideki
- National Institute of Genetics
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- Kaminuma Eli
- National Institute of Genetics
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- Toyoda Atsushi
- National Institute of Genetics
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抄録
Completion of tomato genome sequencing project has broad impacts on genetic and genomic studies of tomato and Solanaceae plants. The reference genome sequence derived from Solanum lycopersicum cv ‘Heinz 1706’ serves as the firm basis for sequencing-based approaches to tomato genomics. In this article, we first present a brief summary of the genome sequencing project and a summary of the reference genome sequence. We then focus on recent progress in transcriptome sequencing and small RNA sequencing and show how the reference genome sequence makes these analyses more comprehensive than before. We discuss the potential of in-depth analysis that is based on DNA methylome sequencing and transcription start-site detection. Finally, we describe the current status of efforts to resequence S. lycopersicum cultivars to demonstrate how resequencing can allow the use of intraspecific genomic diversity for detailed phenotyping and breeding.
収録刊行物
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- Breeding Science
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Breeding Science 63 (1), 14-20, 2013
日本育種学会
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詳細情報 詳細情報について
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- CRID
- 1390001204723502848
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- NII論文ID
- 10031151520
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- NII書誌ID
- AA11317194
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- COI
- 1:CAS:528:DC%2BC3sXptVOrsL0%3D
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- ISSN
- 13473735
- 13447610
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- NDL書誌ID
- 024359670
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- PubMed
- 23641177
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- 本文言語コード
- en
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- データソース種別
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- JaLC
- NDL
- Crossref
- PubMed
- CiNii Articles
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- 抄録ライセンスフラグ
- 使用不可