Expression patterns of tomato genes that have no counterpart in <I>Arabidopsis thaliana</I>
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- Yano Kentaro
- Kazusa DNA Res. Inst.
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- Tsugane Taneaki
- Chiba Pref. Agri. Res. Center
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- Watanabe Manabu
- Chiba Pref. Agri. Res. Center
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- Maeda Fumi
- Chiba Pref. Agri. Res. Center
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- Aoki Koh
- Kazusa DNA Res. Inst.
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- Shibata Daisuke
- Kazusa DNA Res. Inst.
Bibliographic Information
- Other Title
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- シロイヌナズナ遺伝子と相同性をもたないトマト遺伝子群の発現パターン
Abstract
To elucidate functions of tomato genes that have no homology with Arabidopsis genes, we analyzed expression profiles during fruit maturation. We prepared DNA array using 10,905 cDNA clones that were selected from fruit and leaf cDNA libraries of a miniature tomato cultivar Micro-Tom, as representatives of non-redundant sequences of 37,972 Micro-Tom ESTs. Tomato gene expressions in fruit developmental stages were monitored using the DNA array. Patterns of gene expressions were arranged into a 4x4 array using a self-organizing map algorithm. We identified 1151 probes corresponding to tomato genes that have no sequence homology with Arabidopsis genes, namely, non-Arabidopsis genes, on the DNA array. The expression patterns of the non-Arabidopsis genes distributed evenly in the self-organizing map, without significant differences with those of the whole genes. This result suggested that the non-Arabidopsis genes participate in diverse physiological processes of fruit maturation.
Journal
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- Plant and Cell Physiology Supplement
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Plant and Cell Physiology Supplement 2006 (0), 885-885, 2006
The Japanese Society of Plant Physiologists
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Details 詳細情報について
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- CRID
- 1390001205630946944
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- NII Article ID
- 130006991907
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- Data Source
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- JaLC
- CiNii Articles
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- Abstract License Flag
- Disallowed