KaPPA-View4: The newest version of the tool for integration of transcriptome and metabolome on metabolic pathway maps

DOI

Bibliographic Information

Other Title
  • KaPPA-View4: 代謝経路マップによるオミクスデータ解析ツールの最新バージョン

Description

We have developed a web-based analysis tool, KaPPA-View, which enables to view transcriptome and metabolome data on the same metabolic pathway maps (Tokimatsu et al 2005, Plant Physiol 138:1289-1300). Recently we released the newest version, KaPPA-View4, whose features were as follows.<br>1) Dramatically Improved Speeds: We totally reviewed the program architecture and successfully improved the processing speeds for all the analysis steps.<br>2) Support for the Macintosh OS: The SVG Viewer plug-in is no longer needed for map representation, enables to provide the same analysis environment for Windows, Macintosh, and Linux users.<br>3) Analysis with User Maps: Users can prepare their own pathway maps with the free drawing software "Inkscape", and utilize them for data analyses.<br>4) Utilization as an External Viewer from the Other Systems: KaPPA-View4 provides a function for direct data uploading and viewing from the other application programs without logging-in to KaPPA-View4 through the web page. This function enables developers of omics databases to utilize KaPPA-View4 as an external viewer to represent their data on the pathway maps.<br>KaPPA-View4: http://kpv.kazusa.or.jp/kpv4/

Journal

Details 詳細情報について

  • CRID
    1390001205631004032
  • NII Article ID
    130006991986
  • DOI
    10.14841/jspp.2010.0.0169.0
  • Data Source
    • JaLC
    • CiNii Articles
  • Abstract License Flag
    Disallowed

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