KaPPA-View4: The newest version of the tool for integration of transcriptome and metabolome on metabolic pathway maps
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- Sakurai Nozomu
- Kazusa DNA Research Institute
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- Suzuki Hideyuki
- Kazusa DNA Research Institute
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- Shibata Daisuke
- Kazusa DNA Research Institute
Bibliographic Information
- Other Title
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- KaPPA-View4: 代謝経路マップによるオミクスデータ解析ツールの最新バージョン
Description
We have developed a web-based analysis tool, KaPPA-View, which enables to view transcriptome and metabolome data on the same metabolic pathway maps (Tokimatsu et al 2005, Plant Physiol 138:1289-1300). Recently we released the newest version, KaPPA-View4, whose features were as follows.<br>1) Dramatically Improved Speeds: We totally reviewed the program architecture and successfully improved the processing speeds for all the analysis steps.<br>2) Support for the Macintosh OS: The SVG Viewer plug-in is no longer needed for map representation, enables to provide the same analysis environment for Windows, Macintosh, and Linux users.<br>3) Analysis with User Maps: Users can prepare their own pathway maps with the free drawing software "Inkscape", and utilize them for data analyses.<br>4) Utilization as an External Viewer from the Other Systems: KaPPA-View4 provides a function for direct data uploading and viewing from the other application programs without logging-in to KaPPA-View4 through the web page. This function enables developers of omics databases to utilize KaPPA-View4 as an external viewer to represent their data on the pathway maps.<br>KaPPA-View4: http://kpv.kazusa.or.jp/kpv4/
Journal
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- Plant and Cell Physiology Supplement
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Plant and Cell Physiology Supplement 2010 (0), 0169-0169, 2010
The Japanese Society of Plant Physiologists
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Details 詳細情報について
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- CRID
- 1390001205631004032
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- NII Article ID
- 130006991986
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- Data Source
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- JaLC
- CiNii Articles
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- Abstract License Flag
- Disallowed