cDNA Databases of Tomato: MiBASE and KaFTom
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- Suzuki Ayako
- Fac. of Agri., Meiji Univ.
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- Kawamura Shingo
- Fac. of Agri., Meiji Univ.
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- Hongo Kohei
- Fac. of Agri., Meiji Univ.
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- Yamamoto Naoki
- Fac. of Agri., Meiji Univ.
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- Aoki Koh
- Kazusa DNA Res.
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- Shibata Daisuke
- Kazusa DNA Res.
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- Yano Kentaro
- Fac. of Agri., Meiji Univ.
Bibliographic Information
- Other Title
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- トマトcDNAデータベース： MiBASEおよびKaFTom
Abstract
We have analyzed data of tomato (Solanum lycopersicum) cDNA resources from a laboratory-grown miniature tomato cultivar "Micro-Tom" and provided the obtained information from databases. <br>To construct 'Kazusa Tomato Unigenes (KTUs)', we used Micro-Tom ESTs from nine cDNA libraries and publicly available tomato ESTs. Information of KTUs including functional annotations is available from MiBASE (http://www.pgb.kazusa.or.jp/mibase/). The current version of KTU (KTU3), constructed from 322,795 ESTs, contains 76,276 Unigenes. <br>We have also determined 13,227 High Throughput cDNAs (HTCs) from four Micro-Tom full-length cDNA libraries. We provide information of HTCs with functional annotations and structural annotations from KaFTom (http://www.pgb.kazusa.or.jp/kaftom/).<br>We have also developed a seamlessly integrated database 'TOMATOMICS' that combines information provided from MiBASE and KaFTom.<br><br>Acknowledgements: This work was partly supported by National Bio-Resource Project (NBRP). This research was also supported by Dr. Satoh (University of Tsukuba) and Dr. Arie (Tokyo University of Agriculture and Technology).
Journal
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- Plant and Cell Physiology Supplement
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Plant and Cell Physiology Supplement 2010 (0), 0729-0729, 2010
The Japanese Society of Plant Physiologists
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Details 詳細情報について
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- CRID
- 1390001205631083392
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- NII Article ID
- 130006992100
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- Data Source
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- JaLC
- CiNii Articles
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- Abstract License Flag
- Disallowed