MiBASE and KaFTom: Databases of Transcriptome and Full-length cDNAs of Tomato
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- Suzuki Ayako
- Fac. of Agri., Meiji Univ.
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- Ogawa Yukiko
- Fac. of Agri., Meiji Univ.
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- Aoki Koh
- Kazusa DNA Res. Inst.
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- Shibata Daisuke
- Kazusa DNA Res. Inst.
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- Yano Kentaro
- Fac. of Agri., Meiji Univ.
Bibliographic Information
- Other Title
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- MiBASEおよびKaFTom: トマトのEST, Unigeneおよび完全長cDNAのデータベース
Abstract
A miniature cultivar Micro-Tom has attracted much attention as a model of tomato (Solanum lycopersicum). We have constructed five cDNA libraries and four full-length cDNA libraries from Micro-Tom, and generated ESTs and full-length cDNAs. By assembling Micro-Tom ESTs with publicly available tomato ESTs, a non-redundant sequence set (unigenes) is obtained. At present, KTU3 (Kazusa Tomato Unigene ver. 3) have been constructed and annotated with BLAST-based similarity. A database MiBASE (http://www.kazusa.or.jp/jsol/microtom/) have been maintaining to provide information of Micro-Tom ESTs and KTUs, including DNA markers, BLAST annotations, Gene Ontology terms, metabolic pathways and gene expressions obtained from Micro-Tom cDNA microarrays. To elucidate intron-exon structures of the tomato genome, we also compare the full-length cDNAs with genomic sequences from the international tomato genome sequencing project. All information of the genome annotations is available from a database KaFTom (http://www.pgb.kazusa.or.jp/kaftom/).
Journal
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- Plant and Cell Physiology Supplement
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Plant and Cell Physiology Supplement 2009 (0), 1011-1011, 2009
The Japanese Society of Plant Physiologists
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Details 詳細情報について
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- CRID
- 1390001205632182528
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- NII Article ID
- 130006993739
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- Data Source
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- JaLC
- CiNii Articles
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- Abstract License Flag
- Disallowed