Side-chain Conformations Cooperatively Restricted in Protein Secondary Structure-1-A Novel Method for Exhaustive Structure Searching
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- NAKAMURA Haruki
- Biomolecular Engineering Research Institute
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- TANIMURA Ryuji
- Basic Research Laboratories, Toray Industries, Inc.
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- KIDERA Akinori
- Graduate School of Science, Kyoto University
書誌事項
- タイトル別名
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- Side-chain Conformations Cooperatively Restricted in Protein Secondary Structure. I. A Novel Method for Exhaustive Structure Searching.
- Side-chain Conformations Cooperatively
- I. A Novel Method for Exhaustive Structure Searching
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Protein side-chain conformations were examined by searching for all combinations of the side-chain rotamers, with energies near the global minimum, that were found in advance by the dead-end elimination algorithm. Using this method, the side-chain configurational entropies and their correlations were analyzed for the hydrophobic sides of the secondary structures of proteins. The conformations of several bulky side-chains in α-helices were found to be cooperatively fixed by the restricted side-chain conformations of the neighboring β-branched amino acids. In β-sheet, the side-chain conformations are not restricted by the backbone structures of the individual β-strands, but those in the inner stands are restricted, due to the correlation between the side-chains on the neighboring strands.
収録刊行物
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- Proceedings of the Japan Academy. Ser. B: Physical and Biological Sciences
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Proceedings of the Japan Academy. Ser. B: Physical and Biological Sciences 72 (7), 143-148, 1996
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詳細情報 詳細情報について
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- CRID
- 1390282679121732608
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- NII論文ID
- 130000903688
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- NII書誌ID
- AA00785485
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- ISSN
- 13492896
- 03862208
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- NDL書誌ID
- 4109582
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- 本文言語コード
- en
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- データソース種別
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- JaLC
- NDL
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- 抄録ライセンスフラグ
- 使用不可