Genetic diversity analysis of Indonesian native chickens using SNP markers on the Z chromosome
-
- Riztyan
- United Graduate School of Agriculture, Kagoshima University, Japan.
-
- SUTHAMA Nyoman
- Faculty of Animal Agriculture, Diponegoro University, Indonesia.
-
- ARDININGSASI Sri Murni
- Faculty of Animal Agriculture, Diponegoro University, Indonesia.
-
- SHIMOGIRI Takeshi
- Faculty of Agriculture, Kagoshima University, Japan.
-
- KAWABE Kotaro
- Fronteir Science Research Centre, Kagoshima University, Japan.
-
- KAWAMOTO Yasuhiro
- Faculty of Agriculture, University of the Ryukyus, Japan.
-
- OKAMOTO Shin
- Faculty of Agriculture, Kagoshima University, Japan.
Bibliographic Information
- Other Title
-
- Z染色体のSNPマーカーを用いたインドネシア在来鶏の遺伝的多様性解析
Search this article
Abstract
Analysis of SNPs on the Z sex chromosome is thought to be a useful approach to estimate genetic diversity and genetic relationships in chicken populations. The objective of this research was to analyze the genetic diversity and genetic relationship of Indonesian native chicken populations. Here, we genotyped six unlinked SNP loci on the Z chromosome of 103 hens and 85 cocks from the four populations of Indonesian native chickens: Black Kedu (BK), Kedu (KD), Kampung (LOC), and Arab (AR). Genetic diversity and matrix pairwise distance FST were computed for 23 BK, 116 LOC, 20 AR, and 29 KD chickens. Average expected heterozygosity was greater in LOC and KD than BK and AR. The lowest pairwise FST value was estimated at 0.028 (P<0.05) between LOC and KD. In contrast, the pairwise FST value between BK and AR was larger (0.092) and was significant (P<0.05). These results suggested that LOC and KD are related closely, whereas BK and AR are related more distantly.
Journal
-
- The Journal of Animal Genetics
-
The Journal of Animal Genetics 39 (2), 49-53, 2011
Japanese Society of Animal Breeding and Genetics
- Tweet
Details 詳細情報について
-
- CRID
- 1390282680189498496
-
- NII Article ID
- 130002147789
- 10030389952
-
- NII Book ID
- AA11636975
-
- ISSN
- 18843883
- 13459961
-
- NDL BIB ID
- 023466519
-
- Text Lang
- en
-
- Data Source
-
- JaLC
- NDL
- Crossref
- CiNii Articles
-
- Abstract License Flag
- Disallowed