The efficiency of entropy evolution rate for construction of phylogenetic trees.
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- Miyazaki Satoru
- The institute of Physical and Chemical Research
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- Sugawara Hideaki
- Center for Information Biology, National Institute of Genetics
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- Ohya Masanori
- Department of Information Sciences, Science University of Tokyo
書誌事項
- タイトル別名
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- efficiency of entropy evolution rate fo
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抄録
The entropy evolution rate introduced by Ohya (Ohya, 1989) is one of the measures to classify gene sequences such as DNA sequences or amino acid sequences and to construct phylogenetic trees. The efficiency of this measure for the construction of phylogenetic trees with DNA sequences is examined in this paper. Taking model trees with branches of given evolutionary rates, we generated sequences with 1000 nucleotides along the branches of each model. Computer simulation was performed 100 times for each model. The entropy evolution rate was found to give the correct toplogy of tree more often than other methods when the evolutionary rate of a lineage (branch) was higher than 0.5 par site.<br>
収録刊行物
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- Genes & Genetic Systems
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Genes & Genetic Systems 71 (5), 323-327, 1996
日本遺伝学会
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詳細情報 詳細情報について
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- CRID
- 1390282680420204928
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- NII論文ID
- 10003760274
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- NII書誌ID
- AA11077421
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- ISSN
- 18805779
- 13417568
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- NDL書誌ID
- 4163736
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- 本文言語コード
- en
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- データソース種別
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- JaLC
- NDL
- Crossref
- CiNii Articles
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- 抄録ライセンスフラグ
- 使用不可