DDBJ Read Annotation Pipeline: A cloud computing based pipeline for high-throughput analysis of new generation sequencing data

DOI

Bibliographic Information

Other Title
  • DDBJ Read Annotation Pipeline : 新型シーケンサ由来配列のクラウド型パイプライン

Description

The DNA Data Bank of Japan (DDBJ) released DDBJ Sequence Read Archive (DRA), an archive database of raw data for New Generation Sequencing (NGS) reads. <br>The huge and short read data generated by the sequencers suffer biologists to require computational hardware and bioinformatics skills. DDBJ has been started the service of a cloud computing based analytical pipeline for high-throughput annotation for NGS reads named as DDBJ Read Annotation Pipeline (http://p.ddbj.nig.ac.jp/). <br>The features of the pipeline are as follows.<br>1) Application tools for various NGS platforms (illumina, Roche/454 and Life technology) are available.<br>2) Fundamental statistics such as quality scores or sequence depth is calculated via output files with uniform format.<br>3) DDBJ Supercomputer is utilized with remote control via the pipeline web server under scalable cloud computing manner.<br>In the annotation stage of the pipeline, various functions of piled sequencing reads (detecting SNPs and indels, counting gene expression levels, and so on), genome-wide visualization of alignment results are introduced.

Journal

Details 詳細情報について

  • CRID
    1390282680612736896
  • NII Article ID
    130006998625
  • DOI
    10.14841/jspp.2011.0.0828.0
  • Data Source
    • JaLC
    • CiNii Articles
  • Abstract License Flag
    Disallowed

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