A Memory Efficient Short Read <i>De Novo</i> Assembly Algorithm

Bibliographic Information

Other Title
  • メモリ効率の良い<i>de novo</i>アセンブリアルゴリズム

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Description

In this paper, we propose an algorithm for de novo assembly with lower memory. In our experiments using the E. coli K-12 strain MG 1655, the average maximum memory consumption of the proposed method was approximately 20% of that of the popular assemblers. Moreover, in the experiments using human chromosome 14, the average amount of memory of our method was approximately 60% of that of the popular assemblers.

Journal

Details 詳細情報について

  • CRID
    1572543027715080576
  • NII Article ID
    110009884011
  • NII Book ID
    AA12055912
  • ISSN
    09196072
  • Text Lang
    ja
  • Data Source
    • CiNii Articles

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