Cryoem Models And Associated Data Submitted To The 2015/2016 Emdatabank Model Challenge

メタデータ

公開日
2018-01-24
サイズ
  • 1.1
DOI
  • 10.5281/zenodo.1137818
  • 10.5281/zenodo.1165999
公開者
Zenodo
データ作成者 (e-Rad)
  • Lawson, Catherine L.
  • Kryshtafovych, Andriy
  • Chiu, Wah
  • Adams, Paul
  • Brünger, Axel
  • Kleywegt, Gerard
  • Patwardhan, Ardan
  • Read, Randy
  • Schwede, Torsten
  • Topf, Maya
  • Afonine, Pavel
  • Avaylon, Jaycob
  • Baker, Matthew
  • Braun, Tatjana
  • Cao, Wei
  • Chittori, Sagar
  • Croll, Tristan
  • DiMaio, Frank
  • Frenz, Brandon
  • Grudinin, Sergei
  • Hoffmann, Alexandre
  • Hryc, Corey
  • Joseph, Agnel Praveen
  • Kawabata, Takeshi
  • Kihara, Daisuke
  • Mao, Binchen
  • Matthies, Doreen
  • McGreevy, Ryan
  • Nakamura, Haruki
  • Nakamura, Shugo
  • Nguyen, Lisa
  • Schroeder, Gunnar
  • Shekhar, Mrinal
  • Shimizu, Kentaro
  • Singharoy, Abhishek
  • Sobolev, Oleg
  • Tajkhorshid, Emad
  • Teo, Ivan
  • Terashi, Genki
  • Terwilliger, Thomas
  • Wang, Kevin
  • Yu, Iris
  • Zhou, Hong
  • Sala, Raul

説明

Files and metadata associated with the EMDataBank/Unified Data Resource for 3DEM 2015/2016 Models Challenge hosted at challenges.emdatabank.org are deposited. All members of the Scientific Community--at all levels of experience--were invited to participate as Challengers, and/or as Assessors. Eight recently determined target structures were selected for the challenge. All of the maps were archived in the EM Data Bank (EMDB; http://emdatabank.org). In total 16 Challengers created 106 models and uploaded their results with associated details. In the zip files, each entry is represented in a folder containing the original deposition upload (deposited_EM.pdb), initial processing at RCSB/Rutgers (deposited_EM_edited.pdb, maxit.cif, maxit.cif.pdb) and final model version evaluated (model-compare.pdb) at UC Davis (http://model-compare.emdatabank.org). This model challenge was one of two community-wide challenges sponsored by EMDataBank in 2015/2016 to critically evaluate 3DEM methods that are coming into use, with the ultimate goal of developing validation criteria associated with every 3DEM map and map-derived model.

{"references": ["Henderson et al (2012) Outcome of the first electron microscopy validation task force meeting. doi:10.1016/j.str.2011.12.014", "Lawson et al (2016) EMDataBank unified data resource for 3DEM. doi:10.1093/nar/gkv1126"]}

The 2015/2016 Model Challenge was supported by the US National Institutes of Health / National Institute for General Medical Sciences (NIH/NIGMS) Under Grant Number R01 GM079429 to Wah Chiu (PI).

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