RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments

メタデータ

公開日
2019-02-12
DOI
  • 10.5281/zenodo.2562715
  • 10.5281/zenodo.2562716
公開者
Zenodo
データ作成者 (e-Rad)
  • Druet Tom

説明

these are two files used to test the RZooRoH package in the manuscript:<br> RZooRoH: an R package to characterize genomic autozygosity and identify homozygous-by-descent segments<br> A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet Each row represents a SNP. The files contain first 5 information columns followed by the genotyes (1 row per individual):<br> 1 Chromosome number<br> 2 Marker name<br> 3 Position in bp<br> 4 Allele 1<br> 5 Allele 2 Genotypes are coded as 0, 1 and 2 for AA, AB and BB and 9 for missing. The file geno_sim15_5col.txt contains the simulated genotypes: 25000 markers and 500 individuals.<br> The file filtered_soay_5col.txt contains the sheep genotype data: 47365 markers and 110 individuals. The origin of the files is described in the paper.<br> The simulated data set is from Druet and Gautier (2017) whereas the sheep data comes from Kijas et al. (2012).

{"references": ["A.R. Bertrand, N.K. Kadri, L. Flori, M. Gautier and T. Druet (2019) Methods in Ecology and Evolution"]}

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