TreeSnatcher: coding trees from images

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  • Thomas Laubach
    1 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, 2University of Vienna, 3Medical University of Vienna and 4University of Veterinary Medicine Vienna, Vienna, Austria
  • Arndt von Haeseler
    1 Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, 2University of Vienna, 3Medical University of Vienna and 4University of Veterinary Medicine Vienna, Vienna, Austria

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<jats:title>Abstract</jats:title> <jats:p>Summary: TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds.</jats:p> <jats:p>Availability: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher.</jats:p> <jats:p>Contact:  arndt.von.haeseler@univie.ac.at</jats:p>

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  • Bioinformatics

    Bioinformatics 23 (24), 3384-3385, 2007-09-24

    Oxford University Press (OUP)

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